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* - Remove manual creation and removal of share/applications, as it's now in ↵amdmi32013-10-223-4/+0
| | | | | | the mtree (categories starting with [bce]) Approved by: portmgr (bdrewery)
* Deprecated some ports broken for more than 6 monthbapt2013-10-181-0/+3
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* - Switch to build with lang/ruby19tabthorpe2013-10-111-1/+1
| | | | | | - No PORTREVISION bump, option is off by default With hat: portmgr
* Update BioCocoa to the latest release.theraven2013-10-093-75/+68
| | | | Approved by: bapt (mentor)
* - Update to 0.5.1wen2013-10-043-4/+4
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* - Update to 1.7sunpoet2013-10-043-12/+12
| | | | | | - Support STAGEDIR Changes: http://search.cpan.org/dist/Bio-GFF3/Changes
* biology/avida: add <unistd.h>, <typoinfo> for modern compilersmarino2013-10-022-0/+20
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* - Remove NO_STAGE as these have been tested to be safebdrewery2013-09-252-2/+0
| | | | With hat: portmgr
* Use value of BOINC_CLIENT_HOME in pkg-messagerene2013-09-242-2/+3
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* - Add stagedir supportrene2013-09-241-12/+17
| | | | - Rewrap lines
* Respect 'make check-sanity' for this port too.rene2013-09-241-2/+1
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* Fix NO_STAGE attributionbapt2013-09-231-1/+1
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* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵bapt2013-09-2094-114/+117
| | | | biology)
* Mark BROKEN, fails checksumbdrewery2013-09-181-0/+2
| | | | With hat: portmgr
* Add an explicit dependency on pkgconfantoine2013-09-081-1/+1
| | | | Approved by: portmgr (bapt)
* - Use single space after WWW:sunpoet2013-09-081-1/+1
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* - convert to the new perl5 frameworkaz2013-09-074-4/+7
| | | | Approved by: portmgr (bapt@, blanket)
* - Make ports use the libc provided iconv implementation on 10-CURRENTmadpilot2013-09-053-3/+5
| | | | | | | | | | after r254273 - Fix a bunch of ports to properly work after this - Mark converters/libiconv as IGNORE for systems with iconv in libc Reviewed by: bapt Approved by: portmgr (bapt) Discussed with: bapt, bsam (who both contributed ideas and code)
* - Add WWWsunpoet2013-08-301-2/+1
| | | | | - Use single space after WWW: - Remove Author line
* - Disconnect ports removed in r325546bdrewery2013-08-291-1/+0
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* Update to latest GNUstep core libraries.theraven2013-08-298-412/+85
| | | | | | | | | | | Update dependent packages with more recent releases. Remove old and bit-rotted ones. Switch to using clang 3.3 and libobjc2 1.7 by default, so modern Objective-C features work out of the box and remove a lot of configurable options for sub-optimal (and, often, unsupported / deprecated upstream) configurations. Take maintainership of GNUstep-related ports. Several of the ports left in have scary warnings which mean that they are likely broken in lots of cases. Future commits will fix them. Approved by: bapt
* Make sure to respect CC and CXX, this fixes the build on head without gccbapt2013-08-281-2/+2
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* Update math/gsl to 1.16 and adjust some dependent portsbf2013-08-271-2/+2
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* - Update to 2.3.5wen2013-08-204-442/+9
| | | | | | - Add LICENSE - Remove pkg-message since license changed upstream - Do not install test files as example
* biology/tinker: Regenerate distinfo to unbreak fetchmarino2013-08-182-2/+3
| | | | | | | | | Apparently the distfile was rerolled. The sizes of the file are only a few bytes apart. Since the master site never changed, it's reasonable just to regenerate the distinfo and bump the PORTREVISION. PR: 180664 Approved by: bapt/culot (mentors, implicit)
* Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.gerald2013-08-181-1/+1
| | | | | | | | | | | | | | Right now this is a noop in the former case and a noop in the latter case unless lang/gcc44 has been installed explicitly. This puts a bit more emphasis on standardizing on a canonical version "current" GCC and makes it easier to update that canonical version by changing the default in Mk/bsd.gcc.mk and updating the lang/gcc port. That is, USE_GCC=yes means "use a decent/modern version of GCC" without having to worry about details. Approved by: portmgr (bdrewery)
* - Remove MAKE_JOBS_SAFE variableak2013-08-1510-10/+0
| | | | Approved by: portmgr (bdrewery)
* biology/libgenome: Mark jobs unsafemarino2013-08-141-0/+2
| | | | Approved by: bapt/culot (mentors, implicit)
* - update libdg to 2.1.0dinoex2013-08-092-5/+5
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* - Pet portlint: remove blank line among *_DEPENDSsunpoet2013-08-061-1/+0
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* - Convert to new perl frameworkaz2013-08-062-2/+4
| | | | | | - Trim Makefile header Approved by: wen@ (maintainer)
* - Convert to new perl frameworkmat2013-08-032-2/+2
| | | | - Remove MAKE_JOBS_SAFE=yes, it's the default.
* - Convert to new perl frameworkaz2013-08-032-2/+2
| | | | - Trim Makefile header
* - Convert to new perl frameworkmat2013-08-038-24/+19
| | | | | - Trim Makefile header - Remove MAKE_JOBS_SAFE=yes, it's the default.
* - Update to 1.6jadawin2013-08-012-4/+5
| | | | | - Convert to new perl5 framework - Changelog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.6/Changes
* KDE3 and QT3 expired on 2013-07-01, remove these ports.rene2013-07-276-187/+0
| | | | | | | | | | | | | | | | Unfortunately, this also affects some ports using QT3 as a GUI toolkit. Changes to infrastructure files: - bsd.kde.mk : obsolete, remove - bsd.qt.mk : note that a CONFLICTS_BUILD line can probably go after a while - CHANGES : document the removals from bsd.port.mk - KNOBS : remove KDE and QT (KDE4 and QT4 should be used instead) - MOVED : add the removed ports PR: ports/180745 Submitted by: rene Approved by: portmgr (bapt) Exp-run by: bapt
* - Update to 3.0wen2013-07-203-32/+46
| | | | | - Convert to optionsNG - Drop maintainership
* - Update to 0.56wen2013-07-203-3/+13
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* - Update to 2.37wen2013-07-203-3/+7
| | | | Changes: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.37/Changes
* - Update to 36.3.6wen2013-07-195-23/+30
| | | | - Drop maintainership
* - Update to 6.2.06miwi2013-07-154-13/+23
| | | | | PR: 180518 Submitted by: Ports Fury
* - Update to 4.4.2miwi2013-07-152-3/+3
| | | | | PR: 180515 Submitted by: Ports Fury
* - Update to 7.31.0sunpoet2013-07-121-0/+1
| | | | | | | | | | | | | | | | | | | | | | | - Bump PORTREVISION for ftp/curl shlib change - Add TEST_DEPENDS - Convert to new options framework - Adjust options: - Add COOKIES - Add CYASSL, NSS, POLARSSL, THREADED_RESOLVER, TLS_SRP [1] - Add GSSAPI and SPNEGO [2] - Remove KERBEROS4 - Rename LIBIDN to IDN - Remove TRACKMEMORY [1] - Sort option handler - Add SLAVEDIRS: ftp/curl-hiphop - Cosmetic change - Cleanup Makefile header - While I'm here, fix typo (PORTREVSION) in x11-wm/ede/Makefile Changes: http://curl.haxx.se/changes.html PR: ports/172325 (-exp run), ports/177369 (based on) [1] Submitted by: Hirohisa Yamaguchi <umq@ueo.co.jp> [1], hrs (via email) [2] Exp run by: miwi
* Convert from USE_MOTIF to USES=motifbapt2013-07-101-6/+2
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* Convert from USE_MOTIF to USES=motifbapt2013-07-103-7/+4
| | | | | | | While here: - trim headers - Remove indefinite article from comment - convert USE_GMAKE to USES=gmake
* Fix some PORT_OPTIONS conversionsantoine2013-07-011-1/+1
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* Convert to USES=imakebapt2013-06-291-10/+4
| | | | Trim headers
* Fix some screw ups introduced in r319847.rakuco2013-06-252-4/+4
| | | | | | | | | | I'm not sure if the submitter of ports/179224 didn't even test his patch or if the distfile was re-rolled in a bizarre way. Anyway, fix distfile and also cd into the correct directories to actually build the port. PR: ports/179790
* Remove stale (since r321246) pkg-plist file.bsam2013-06-201-39/+0
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* . introdice optionsNG to the port;bsam2013-06-202-98/+26
| | | | | | | | | | | . remove shlib ABI version from LIB_DEPENDS; . introduce EXAMPLE option (do not install examples to DOCSDIR); . bump PORTREVISION; . get use of PLIST_FILES, PORTDOCS and PORTEXAMPLES at Makefile; . get rid of pkg-plist; . trim Makefile heades; . remove acticle from COMMENT; . simplify install commands.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-18/+14
| | | | | | | | . introduce EXAMPLES option (do not install examples to DOCSDIR); . bump PORTREVISION; . make use of PLIST_FILES, PORTDOCS and PORTEXAMPLES at Makefile; . get rid of pkg-plist; . simpify install commands.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-42/+17
| | | | | | | | | | | . mute mdir commands and unmute install commands; . do not use mkdir for parent directories (mkdir implies "-p"); . introduce EXAMPLE option (do not install examples to DOCSDIR); . bump PORTREVISION; . make use of PLIST_FILES, PORTDOCS and PORTEXAMPLES at Makefile; . get rid of pkg-plist; . use standard DOCSDIR and EXAMPLESDIR (instead of a PREFIX/foo/bar path); . trim Makefile headers.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-34/+11
| | | | | | | | . pet portlint: use {} instaed of () at variable; . use PLIST_FILES, PORTDATA and PORTDOCS at Makefile; . get rid of pkg-plist; . remove article from COMMENT; . trim Makefile headers.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-203-13/+12
| | | | | | | | | . mute mkdir; . use PLIST_FILES and PORTDOCS at Makefile; . remove pkg-plist; . trim Makefile headers; . remove article from COMMENT; . pet portlint -- use opne space after WWW: at pkg-descr.
* Use optionsNG for DOCS.bsam2013-06-201-2/+2
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* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-12/+9
| | | | | | . use PORTDOCS at Makefile (thus simplify pkg-plist); . use plain install instead of a .for loop; . trim Makefile headers.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-13/+11
| | | | | | . use PLIST_FILES, PORTDATA and PORTDOCS; . use standard DATADIR and DOCSDIR (rather PREFIX/foo/bar); . remove pkg-plist.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-201-10/+11
| | | | . trim Makefile headers.
* . add license (GPLv2);bsam2013-06-201-8/+9
| | | | | | . bump PORTREVISION; . NOPORTDOCS -> PORT_OPTIONS:MDOCS; . trim Makefile headers.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-12/+12
| | | | | | | | . use f instead of file for a variable (portlint warns against file); . do not mute install commands; . remove article from COMMENT; . trim Makefile headers; . pet portlint: use one space after WWW: at pkg-descr.
* . remove pkg-plist (along with the previous commit).bsam2013-06-201-17/+0
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* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-201-4/+14
| | | | | | | . use PORTDOCS and PORTDATA at makefile; . mute mkdirs; . add padding to PKGMESSAGE; . remove article from COMMENT.
* . NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES;bsam2013-06-202-20/+8
| | | | | . use PORTEXAMPLES at Makefile; . trim Makefile headers.
* . add license (GPLv2);bsam2013-06-201-6/+5
| | | | | | . bump PORTREVISION; . trim article from COMMENT; . trim Makefile headers.
* . pet portlint: add USE_LDCONFIG;bsam2013-06-191-0/+2
| | | | . bump PORTREVISION.
* . trim Makefile headers;bsam2013-06-191-6/+2
| | | | . remove the indefinite article from COMMENT.
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-192-5/+8
| | | | | . use PLIST_FILES and PORTDOCS; . remove pkg-plist (4 lines).
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-192-11/+8
| | | | | . remove LICENSE_FILE for a standard license (GPLv2); . trim Makefile headers.
* Index: Makefilebsam2013-06-191-27/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | =================================================================== --- Makefile (revision 321238) +++ Makefile (working copy) @@ -1,9 +1,5 @@ -# New ports collection makefile for: seqio -# Date created: 17 August 2001 -# Whom: Tony Maher -# +# Created by: Tony Maher # $FreeBSD$ -# PORTNAME= seqio PORTVERSION= 1.2.2 @@ -13,38 +9,32 @@ DISTNAME= ${PORTNAME} MAINTAINER= ports@FreeBSD.org -COMMENT= A set of C functions which can read/write biological sequence files +COMMENT= Set of C functions which can read/write biological sequence files WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} EXAMPLES= example1.c example2.c example3.c example4.c seqio.c \ seqio.h Makefile PROGRAMS= fmtseq grepseq idxseq typeseq wcseq +PLIST_FILES+= ${PROGRAMS:S,^,bin/,} +PORTEXAMPLES= * +PORTDOCS= * +OPTIONS_DEFINE= DOCS EXAMPLES + +.include <bsd.port.options.mk> + do-install: - cd ${WRKSRC}; \ - for file in ${PROGRAMS}; do \ - ${INSTALL_PROGRAM} $$file ${PREFIX}/bin; \ - done -.if !defined(NOPORTEXAMPLES) - ${MKDIR} ${EXAMPLESDIR} - cd ${WRKSRC}; \ - for file in ${EXAMPLES}; do \ - ${INSTALL_DATA} $$file ${EXAMPLESDIR}; \ - done + ${INSTALL_PROGRAM} ${PROGRAMS:S,^,${WRKSRC}/,} ${PREFIX}/bin +.if ${PORT_OPTIONS:MEXAMPLES} + @${MKDIR} ${EXAMPLESDIR} + ${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/,} ${EXAMPLESDIR} .endif -.if !defined(NOPORTDOCS) - ${MKDIR} ${DOCSDIR} - ${MKDIR} ${DOCSDIR}/html +.if ${PORT_OPTIONS:MDOCS} + @${MKDIR} ${DOCSDIR}/html ${INSTALL_DATA} ${WRKSRC}/bioseq.txt ${DOCSDIR} - cd ${WRKSRC}/doc; \ - for file in *.doc; do \ - ${INSTALL_DATA} $$file ${DOCSDIR}; \ - done - cd ${WRKSRC}/html; \ - for file in *.html; do \ - ${INSTALL_DATA} $$file ${DOCSDIR}/html; \ - done + ${INSTALL_DATA} ${WRKSRC}/doc/*.doc ${DOCSDIR} + ${INSTALL_DATA} ${WRKSRC}/html/*.html ${DOCSDIR}/html .endif .include <bsd.port.mk>
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-193-12/+11
| | | | | | | | . use PLIST_FILES and PORTDOCS; . get rid of pkg-plist; . pet portlint: use one space after WWW: at pkg-descr; . trim Makefile headers; . remove the indefinite article from COMMENT.
* - Avoid of using SITE_PERLaz2013-06-071-2/+1
| | | | | | | | - Remove depend on DB_File.pm since it part of perl distribution PR: ports/178877 Submitted by: az Approved by: matainer (timeout)
* - Update to 3.6.9.5miwi2013-06-043-19/+33
| | | | | PR: 179224 Submitted by: Ports Fury
* - Fix build with clangmiwi2013-06-041-0/+10
| | | | | PR: 179215 Submitted by: Ports Fury
* - Trim Makefile headerswen2013-06-013-15/+3
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* - Update to 6.2.05miwi2013-05-292-5/+4
| | | | | PR: 179061 Submitted by: Ports Fury
* - Update to 3.5.1wen2013-05-265-105/+22
| | | | | | - Trim Makefile headers - Convert to optionsNG - Update WWW, MASTER_SITES and COMMENT
* - Update to 6.2.04miwi2013-05-212-3/+3
| | | | | PR: 178590 Submitted by: Ports Fury
* Convert USE_NCURSES by USES=ncursesbapt2013-05-061-2/+1
| | | | Convert USE_READLINE by USES=readline
* Fix build by adding an explicit dep on pkgconfbapt2013-05-041-0/+1
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* - Update to 1.13.0culot2013-04-306-15/+45
| | | | | | | | | - Improve COMMENT (remove leading article, add missing space) - Remove unneeded BSD license file - Trim Makefile's header - Pet portlint (move LICENSE section earlier, change tab to space in WWW link) Changes: http://sourceforge.net/p/staden/news/2013/03/iolib-1130-released/
* Workaround the way mopac installs executables.delphij2013-04-302-1/+4
| | | | | PR: ports/171932 Reported by: Jinsong Zhao <jszhao yeah net>
* - Update to 6.2.02miwi2013-04-293-3/+4
| | | | | PR: 178031 Submitted by: Ports Fury
* Use bsd.port.options.mk instead of bsd.port.{pre|post}.mkrene2013-04-291-2/+2
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* - Convert USE_ICONV=yes to USES=iconvmva2013-04-271-1/+1
| | | | | | - Change USE_GNOME=pkgconfig|gnomehack to USES=pathfix|pkgconfig while here Reviewed by: bapt, kwm
* Remove unneeded escapingbdrewery2013-04-271-6/+2
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* - Update to 5.0.6miwi2013-04-262-3/+3
| | | | | PR: 178032 Submitted by: Ports Fury
* Update MASTERSITES for my server to use httpsgjb2013-04-261-1/+1
| | | | Approved by: wen (maintainer, implicit)
* - Convert USE_GETTEXT to USES (part 3)ak2013-04-251-1/+1
| | | | Approved by: portmgr (bapt)
* Finish converting the whole ports tree to USES=pkgconfigbapt2013-04-231-1/+1
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* For perl@ owned ports:eadler2013-03-293-8/+4
| | | | | - Fix COMMENT - Trim header
* - Update to 4.4.1miwi2013-03-262-25/+17
| | | | | PR: 177257 Submitted by: Ports Fury
* - Mark broken checksum mismatchmiwi2013-03-251-0/+2
| | | | Reported by: pointyhat http://pointyhat.freebsd.org/errorlogs/i386-errorlogs/a.8.20130324140101.pointyhat/dotter-20021204.log
* - Update to 6.2.01miwi2013-03-255-168/+164
| | | | | PR: 177261 Submitted by: ports fury
* - convert USE_CMAKE to USESmakc2013-03-232-4/+2
| | | | | | | - while here clean up some ports from CMAKE_VERBOSE, which is intended for users Approved by: portmgr (miwi)
* Fix build with protobuf-2.5.0vanilla2013-03-212-0/+34
| | | | Obtained from: miwi@
* - adopt optionsNGjgh2013-03-191-19/+28
| | | | | | | - trim historical header - tighten COMMENT Approved by: portmgr (miwi)
* 1: Upgrade protobuf to 2.5.0.vanilla2013-03-181-0/+1
| | | | | 2: bump revision. 3: document UPDATING.
* - adoption of optionsNGjgh2013-03-181-15/+12
| | | | | | - trim historical header Approved by: portmgr (miwi)
* - adoption of optionsNGjgh2013-03-182-130/+129
| | | | | | | | - trim historical header - fix mixture of DOCS/EXAMPLES -> EXAMPLES - add shared description for GLUT to bodm Approved by: portmgr (miwi)
* - adoption of optionsNGjgh2013-03-181-11/+8
| | | | | | | - trim historical header - tighten COMMENT Approved by: portmgr (miwi)
* - adoption of optionsNGjgh2013-03-181-26/+26
| | | | | | | - trim historical header - use tabs in favor of spaces Approved by: portmgr (miwi)
* - Update to 2012.06.20miwi2013-03-146-191/+173
| | | | | PR: 176544 Submitted by: Ports Fury
* Convert USE_BISON to USES= bisonbapt2013-03-081-6/+2
| | | | | | | | | | | | | | It brings bison as a build dependency in case it is set the following way: USES= bison or USES= bison:build it brings bison as a run dependency in case it is set the following way: USES= bison:run it brings bison both as a run and build dependency in case it the set the following way: USES= bison:both While here trim some headers Convert some USE_GNOME= gnomehack to USES= pathfix
* Remove compatibility with FreeBSD 7.Xrene2013-03-072-14/+2
| | | | While here pet Makefile headers.
* Add missing item to pkg-plist reported by QAT but not reported by poudriere.eadler2013-03-031-0/+1
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* Update to 2.33eadler2013-03-032-3/+3
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* - Update to 2.4.1miwi2013-03-023-124/+45
| | | | | PR: 176552 Submitted by: Ports Fury
* Unbreak on 7.X and i386 systems.danfe2013-02-254-1/+37
| | | | Reported by: QAT
* Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.danfe2013-02-236-0/+1218
| | | | | PR: ports/173387 Submitted by: Hannes Hauswedell
* - Update to 0.52 [1]culot2013-02-163-13/+26
| | | | | | | - Capitalize names (Perl) in COMMENT PR: ports/176003 [1] Submitted by: Gea-Suan Lin <gslin@gslin.org>
* - remove empty filesrm2013-02-151-0/+0
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* - Fix build with clangmiwi2013-02-103-24/+26
| | | | | PR: 175034 Submitted by: Ports Fury
* - Update to 1.27jadawin2013-02-052-3/+3
| | | | - Changelog: http://cpansearch.perl.org/src/TFRAYNER/Bio-MAGETAB-1.27/Changes
* - Update to 20121109.araujo2013-02-044-43/+25
| | | | | PR: ports/175014 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
* - Strip header at request of original creatortabthorpe2013-01-271-5/+1
| | | | | Submitted by: trevor With hat: portmgr
* - Update to 2.32jadawin2013-01-242-7/+4
| | | | - Changelog: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.32/Changes
* Bump PORTREVISION after DESKTOP_ENTRIES updatemakc2013-01-231-0/+1
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* - Update to 9.03.araujo2013-01-145-219/+35
| | | | | PR: ports/172499 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
* - Update DESKTOP_ENTRIES:makc2013-01-071-2/+2
| | | | | | | | | | * rephrase Comment field or use port ${COMMENT} if appropriate * adjust Icon field according to the Desktop Entry Specification * update Categories field: remove deprecated category Application; set main category, if missing - Remove indefinite article and/or rephrase COMMENT - Trim Makefile header - Other minor changes
* Take over maintainership.rene2012-12-291-1/+1
| | | | Approved by: pav (previous maintainer)
* Use the new project URL to let the application attach coorectly to therene2012-12-282-18/+15
| | | | | | | | | | | | | | | project, and some cleanups: - use optionsNG - update commands in pkg-install.in - improve %%AMD64%% comment handling - convert Makefile header - remove unused variable SIMAP_URL Bump PORTREVISION PR: ports/174748 Submitted by: myself Approved by: maintainer (pav@)
* Cleanup supporting perl version 5.8 and 5.10,az2012-12-171-7/+1
| | | | lang/perl5.8 and lang/5.10 will be removed from ports tree soon.
* - Update to 1.5wen2012-12-162-3/+3
| | | | Changes: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.5/Changes
* Update to 5.0.4eadler2012-12-152-3/+3
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* - Mark conflict with science/openbabelmakc2012-12-111-6/+4
| | | | - Trim Makefile header
* science/openbabel:makc2012-12-112-2/+13
| | | | | | | | | | | | | - Update openbabel to 2.3.2 - Switch to CMake build system - Add PYTHON and CAIRO options - Don't rename babel binary, mark conflict with ancient biology/babel science/py-openbabel: - Merge py-openbabel to openbabel other: - chase openbabel update
* Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIPbapt2012-12-111-8/+1
| | | | | | | instead given that jar files are just zip files, remove hardcoded do extract target. Reported by: linimon, matthew
* Decommissioning java 1.5 (EOLed since October 2009):bapt2012-12-101-6/+2
| | | | suppress any reference to JAVA_VERSION= 1.5+ (part2)
* Decommissioning java 1.5 (EOLed since October 2009):bapt2012-12-102-2/+2
| | | | suppress any reference to USE_JAVA= 1.5+ (part1)
* - Support CC properlypawel2012-12-083-35/+26
| | | | | | | | | - Switch to PLIST_FILES - Add option for GTK2 support PR: ports/174174 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes
* Update to 2.31.tobez2012-12-073-9/+11
| | | | | | Changes: http://search.cpan.org/dist/Bio-Graphics/Changes Feature safe: yes
* - Reset MAINTAINER due to unrecoverable email bouncezi2012-12-051-1/+1
| | | | | Reported by: portscout Feature safe: yes
* - Fix build with clanggahr2012-12-031-0/+56
| | | | Feature safe: yes
* - Update to version 6.1.01sperber2012-12-0115-753/+788
| | | | | | | | | | | - Add MAKE_JOBS_SAFE - Convert to optionsng - Trim Makefile header PR: ports/171971 Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com> Approved by: beat (mentor) Feature safe: yes
* - Update to version 5.0.2sperber2012-12-017-275/+79
| | | | | | | | | | - Add MAKE_JOBS_UNSAFE - Convert to optionsng PR: ports/171970 Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com> Approved by: beat (mentor) Feature safe: yes
* 2012-11-26 benchmarks/gsbench: No more public distfilesbapt2012-11-284-51/+0
| | | | | | | | | | | 2012-11-26 benchmarks/xengine: No more public distfiles 2012-11-26 biology/belvu: No more public distfiles 2012-11-26 multimedia/kaffeine-mozilla: No more public distfiles 2012-11-26 www/gnustep-ticker: Abandonware 2012-11-26 net/tryst-examples: Abandonware 2012-11-26 net/tryst: Abandonware Feature safe: yes
* - Update to version 2.0wen2012-11-156-80/+60
| | | | | | | | | - Update pkg-descr PR: 172497 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes
* - Update to version 4.4.0pawel2012-10-315-76/+56
| | | | | | | | | | | | | | - Mark MAKE_JOBS_SAFE - Make dependency on print/pdflib optional - Switch to PLIST_FILES While here: - Add missing deps - Add desktop entry PR: ports/172498 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes
* Update to version 2.12.4pawel2012-10-312-10/+4
| | | | | | PR: ports/172218 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes
* - Reset maintainer to perl@wen2012-10-301-1/+1
| | | | Feature safe: yes
* - Update to 1.4wen2012-10-302-8/+4
| | | | | | | Changes: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.4/Changes - Trim Makefile headers Feature safe: yes
* - Trim Makefile headerswen2012-10-301-6/+2
| | | | | | - Reset maintainer to perl@ Feature safe: yes
* Deprecate a bunch of ports that are either abandonware and/or for which no morebapt2012-10-261-0/+3
| | | | | | | public distfiles are available, or for which are -devel version with a more recent stable version for long Feature safe: yes
* 2012-10-20 chinese/wangttf: No more public distfilesbapt2012-10-266-100/+0
| | | | | | | | | | 2012-10-20 chinese/stardict-dict-zh_TW: No more public distfiles 2012-10-20 chinese/stardict-dict-zh_CN: No more public distfiles 2012-10-20 chinese/mingunittf: No more public distfiles 2012-10-20 chinese/dfsongsd: No more public distfiles 2012-10-20 biology/dna-qc: No more public distfiles Feature safe: yes
* - Update to 1.26wen2012-10-252-8/+4
| | | | | | Changes: http://cpansearch.perl.org/src/TFRAYNER/Bio-MAGETAB-1.26/Changes Feature safe: yes
* - cleanup commentsdinoex2012-10-131-5/+0
| | | | Feature safe: yes
* - Update to 1.5.3wen2012-10-083-11/+37
| | | | - Trim Makefile headers
* - Take maintainershipwen2012-10-017-7/+7
|
* - Reassign to the heap at maintainer's requesttabthorpe2012-10-0120-131/+40
|
* Add new ports biology/plink [1] and biology/plinkseq [2]:makc2012-09-279-0/+138
| | | | | | | | | | PLINK is a free, open-source whole genome association analysis toolset. PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data. PR: ports/171918 [1] PR: ports/171922 [2] Submitted by: Jason Bacon <jwbacon at tds.net>
* - update to 1.60rm2012-09-254-133/+140
| | | | | | | | | | | | | while here: - convert Makefile header into two-line format - update COMMENT (indefinite article removed) - change USE_PYTHON to just -2.7 - remove py-reportlab from BUILD_DEPENDS and kick PYTHON_SITELIBDIR from there - tab -> space change in pkg-descr:WWW PR: 171115 Submitted by: wen Approved by: Mauricio Herrera Cuadra <mauricio at arareko dot net> (maintainer)
* Mea culpa, s/Whom/Created by/danfe2012-09-231-1/+1
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* - Adjust "Created by" tag to include more complete submitter's informationdanfe2012-09-231-5/+4
| | | | | - Mute MKDIRs, remove trailing dot from RESTRICTED, drop leading indefinite article from COMMENT where appropriate
* - Reassign to the heap at maintainer's requesttabthorpe2012-09-221-6/+2
|
* Deprecated a bunch a ports with nor more public distfiles (thanks ehaupt'sbapt2012-09-211-0/+3
| | | | distilator
* Mark as broken on sparc64: depends on thread-local storage, which is notlinimon2012-09-081-0/+4
| | | | | | available on sparc64. Hat: portmgr
* Fix build with clangbapt2012-08-241-0/+13
|
* - Submitter is now maintainerscheidell2012-08-071-1/+1
| | | | | PR: ports/169920 Approved by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
* - Update to version 6.903scheidell2012-08-074-44/+119
| | | | | | PR: ports/169920 Submitted by: "Reed A. Cartwright" <cartwright@asu.edu> Approved by: maintainer (timeout, 21 days)
* Switch from libglut to freeglut and retire libglut. Libglut hasn't beenkwm2012-08-053-3/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | developed in years and has been dropped from the MESA 8.0 distribution. Freeglut is a rewrite of glut and is actively developed and is used by many linux distributions instead of libglut. Bump all ports that directly depend on libglut because of the shlib version change. There are some extra items in this patch. *) Because freeglut doesn't have the same dependancies as libglut, some ports need extra dependencies added to USE_XORG to make them build. *) Mark graphics/f90gl broken, f90gl depends on a header that is only shipped with libglut. *) Remove option for libglut/freeglut selection in games/cake, only freeglut remains now. *) While here fix a png related build issue games/vegastrike. Thanks to miwi for running the exp-run. Approved by: portmgr (miwi) Collaboration with: zeising@ Obtained from: xorg-dev staging area.
* Fix typos in COMMENTcs2012-07-291-1/+1
| | | | Approved by: portmgr@ (implicit)
* Fix typos in COMMENTcs2012-07-252-2/+2
|
* Fix typos in COMMENTcs2012-07-241-1/+1
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* Replace USE_GCC=4.4+ by USE_GCC=4.6+ since GCC 4.4 is on its way out.gerald2012-07-221-1/+1
| | | | Approved by: maintainer
* - Update to 1.23sunpoet2012-07-202-5/+5
| | | | | | | - Add LICENSE - Remove WRKSRC Changes: http://search.cpan.org/dist/Bio-MAGETAB/Changes
* - Remove SITE_PERL from *_DEPENDSaz2012-06-301-2/+2
| | | | Approved by: portmgr@ (bapt@)
* - Remove SITE_PERL from *_DEPENDSaz2012-06-301-39/+39
| | | | Approved by: portmgr@ (bapt@)
* - reset MAINTAINERdinoex2012-06-262-2/+2
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* s/X11BASE/LOCALBASE/, or equivalent.dougb2012-06-251-1/+1
| | | | The X11BASE variable is long gone, however these ports were not updated.
* - Update to 2.29sunpoet2012-06-182-4/+3
| | | | Changes: http://search.cpan.org/dist/Bio-Graphics/Changes
* - Update to version 2.1.8sylvio2012-06-186-171/+21
| | | | | | | | | | | Remove file: files/patch-Makefile.in files/patch-configure files/patch-src__control__defaults.h pkg-plist PR: ports/168994 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
* - Update to version 2.12.3sylvio2012-06-183-30/+54
| | | | | PR: ports/168993 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
* - Update to 0.50sunpoet2012-06-133-22/+37
| | | | | - Add TEST_DEPENDS - Sort PLIST
* - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} orswills2012-06-114-4/+4
| | | | | | | | RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned about for a while. PR: ports/168208 Approved by: portmgr (miwi)
* - Fix maintainer emailamdmi32012-06-071-1/+1
| | | | Submitted by: maintainer via private email
* SeqAn is an open source C++ library of efficient algorithmsamdmi32012-06-078-0/+2230
| | | | | | | | | | | and data structures for the analysis of sequences with the focus on biological data. The library is licensed under the 3-clause BSD license except the applications which are GPL. WWW: http://www.seqan.de/ PR: 167571 Submitted by: Hannes <h2+fbsdports@fsfe.org>
* - Remove SITE_PERL from *_DEPENDSaz2012-06-041-1/+1
|
* - Update to 0.49sunpoet2012-06-032-4/+3
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* Set maintainership back to ports@cs2012-06-032-2/+2
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* - update png to 1.5.10dinoex2012-06-0115-16/+19
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* Remove non-serving mirrorcs2012-05-201-2/+1
|
* - Adjust BOINC_* variables to be consistent with new system in boinc-clientpav2012-05-162-9/+9
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* - Update to 0.48sunpoet2012-05-032-5/+5
| | | | - Add BUILD_DEPENDS
* - Update to 1.3culot2012-04-262-3/+3
| | | | Changes: http://search.cpan.org/dist/Bio-GFF3/Changes
* - Update to 2.28wen2012-04-173-3/+4
| | | | ChangeLog: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.28/Changes
* - Update to 1.2culot2012-04-163-16/+18
| | | | | | | - Add LICENSE (Artistic 1 & GPL 1) - Add TEST_DEPENDS Changes: http://search.cpan.org/dist/Bio-GFF3/Changes
* - Update to 0.47wen2012-04-112-3/+3
|
* - Update to 1.0wen2012-03-223-4/+7
| | | | | | - Reset maintainer to perl@ Feature safe: yes
* - Revert ports/165605 as requested by portmgr@pgollucci2012-03-141-1/+7
| | | | | | | | | Note: devel/p5-B-Size and devel/p5-Devel-Arena where intentionally not restored. PR: ports/165605 Approved by: portmgr (bapt) Feature safe: yes (I sure hope so)
* - Remove ports that only work with < perl 5.12 (devel/p5-B-Size, ↵pgollucci2012-03-091-7/+1
| | | | | | | | | | | | | | | devel/p5-Devel-Arena) - Remove conditionals for PERL_LEVEL < 501200 - Remove regression-test targets b/c this will be centralized in Mk/bsd.perl.mk - Other minor cleanups RUN_DEPENDS = ${BUILD_DEPENDS} -> RUN_DEPENDS:= ${BUILD_DEPENDS} PR: ports/165605 Submitted by: pgollucci (myself) Approved by: portmgr (linimon) Exp Run by: linimon Tested by: make index
* - Update to 1.59wen2012-03-063-1070/+1129
| | | | | | PR: ports/165582 Submitted by: wen@ (myself) Approved by: Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer, via email)
* - Update to 0.46wen2012-03-053-3/+12
|
* - Update to 0.4.5wen2012-02-232-3/+3
|
* - Update MASTER_SITES and WWW: linemiwi2012-02-203-20/+28
| | | | | | | | - Add LICENSE - Support PLIST_FILES PR: 164985 Submitted by: Ports Fury
* update to 1.5.0.1.maho2012-02-164-40/+76
|
* - Update to 0.78sunpoet2012-02-113-44/+58
| | | | | | - Sort TEST_DEPENDS, MAN1, MAN3 and PLIST Changes: http://search.cpan.org/dist/Bio-NEXUS/doc/changes.txt
* - Update to 2.26sunpoet2012-02-113-5/+7
| | | | Changes: http://search.cpan.org/dist/Bio-Graphics/Changes
* - Update to 1.22sunpoet2012-02-092-3/+3
| | | | Changes: http://search.cpan.org/dist/Bio-MAGETAB/Changes
* - Update to 0.77wen2012-02-093-5/+8
|
* - fix build with gcc46dinoex2012-02-071-7/+4
|
* - Mark BROKEN on FreeBSD 9.X and up: does not compilepav2012-02-061-1/+7
| | | | | | gcc: AdFrameworkFunctions.m: Objective-C compiler not installed on this system Reported by: pointyhat
* - Respect CCmiwi2012-01-281-1/+2
| | | | | | PR: 163172 Submitted by: Jan Beich <jbeich@tormail.net> Approved by: maintainer timeout
* At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450eadler2012-01-225-5/+5
| | | | | | | | | | ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are currently broken. This is a temporary measure until we organically stop using := or someone(s) spend a lot of time changing all the ports over. Explicit duplication > := > = and this just moves ports one step to the left Approved by: portmgr
* - Update to 3.23sylvio2012-01-172-3/+3
|
* Chase pdflib.so version and bump PORTREVISION accordingly.ale2012-01-101-2/+2
|
* - The proper acronym for Apache Software License 2 is really AL2tabthorpe2012-01-091-1/+1
| | | | | | | | | - Thanks to crees@ for generating the initial patch PR: ports/163521 Submitted by: Pedro Giffuni <pfg apache.org> Hat: portmgr Exp run by: pav
* - Update to 0.87wen2011-12-233-4/+6
|
* - Update to 1.21sunpoet2011-11-242-4/+5
| | | | | Changes: http://search.cpan.org/dist/Bio-MAGETAB/Changes Feature safe: yes
* - unbreakgahr2011-11-172-2/+29
| | | | Feature safe: yes
* Does not build on powerpc-9: error in pthreads.linimon2011-11-101-0/+4
| | | | | Hat: portmgr Feature safe: yes
* - Remove WITH_FBSD10_FIX, is no longer neededmiwi2011-11-091-1/+0
|
* - Mark BROKEN: does not compile with new fltkpav2011-11-051-0/+2
| | | | Reported by: pointyhat
* - Fix fetch and update WWWpav2011-11-052-2/+2
|
* - Fix build on FreeBSD 10miwi2011-10-291-0/+1
|
* - Update to 0.45sunpoet2011-10-292-3/+3
|
* The vast majority of pkg-descr files had the following format when theydougb2011-10-243-10/+1
| | | | | | | | | | | | | | | | had both lines: Author: ... WWW: .... So standardize on that, and move them to the end of the file when necessary. Also fix some more whitespace, and remove more "signature tags" of varying forms, like -- name, etc. s/AUTHOR/Author/ A few other various formatting issues
* - remove maintainer tags from pkg-descreadler2011-10-2311-27/+0
| | | | | Approved by: portmgr Approved by: bapt (mentor)
* - Update to 0.43sunpoet2011-10-173-3/+7
|
* - Update to 0.44wen2011-10-132-4/+4
|
* - ${FFLAGS} might contain commaspav2011-10-111-1/+1
| | | | Reported by: pointyhat
* - Update to 0.7wen2011-10-102-3/+3
| | | | ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.7/Changes
* - Fix LICENSE (Artistic 1 instead of Artistic 2)culot2011-10-071-1/+1
| | | | | | | - Pet portlint(1) PR: ports/161336 Submitted by: Simon Olofsson <simon@olofsson.de>
* - Update to 2.25sunpoet2011-10-033-22/+23
| | | | | | | - Sort MAN3 and PLIST - Pet portlint Changes: http://search.cpan.org/dist/Bio-Graphics/Changes
* - Add build depends to silence build warningsswills2011-09-251-1/+2
|
* - Fix missing DEPENDS to silence build warningsswills2011-09-251-1/+2
|
* - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)amdmi32011-09-245-10/+8
| | | | | | | | | - Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead PR: 157936 Submitted by: myself Exp-runs by: pav Approved by: pav
* - Update to 0.6wen2011-09-222-3/+3
| | | | ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.6/Changes
* Change maintainer address to my FreeBSD addresscs2011-09-152-2/+2
| | | | Approved by: wen@ (mentor)
* - Fix MASTER_SITES and WWW: linewen2011-08-262-33/+19
| | | | | | | | - Add LICENSE - Support CC/CFLAGS properly PR: ports/160083 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
* - Add missing BUILD_DEPENDSswills2011-08-181-1/+2
| | | | | | PR: ports/159827 Submitted by: swills (me) Approved by: wen (maintainer)
* Remove USE_GNOME=gnometarget from ports. It has been a empty keyword sincekwm2011-08-122-2/+0
| | | | | | | mid 2008. PR: ports/159624 Submitted by: Ruslan Mahmatkhanov <cvs-src@yandex.ru>
* - Update to 1.5.1wen2011-08-113-12/+41
|
* - Update to 0.40culot2011-08-102-3/+6
| | | | - Add LICENSE (Artistic 1 & GPLv1)
* Remove WWW entries from unmaintained ports that return 404 or where the domainehaupt2011-08-031-2/+0
| | | | disappeared.
* Deprecate port with no more public distfilesbapt2011-08-021-0/+3
|
* Bye bye abandonwares (part 2)bapt2011-08-0130-726/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | 2011-08-01 benchmarks/rawio: Looks like an abandonware, no more public distfiles 2011-08-01 benchmarks/tmetric: Looks like abandonware, no more public distfiles 2011-08-01 biology/L-Breeder: Looks like an abandonware, no more public distfile 2011-08-01 biology/crimap: Looks like an abandonware, no more public distfile 2011-08-01 biology/distribfold: No more upstream, looks like an abandonware 2011-08-01 biology/kinemage: Looks like an abandonware, no more public distfile 2011-08-01 biology/lsysexp: Looks like an abandonware, no more public distfile 2011-08-01 chinese/chm2html: Looks like an abandonware, no more public distfile 2011-08-01 chinese/ntuttf: No more public distfiles available 2011-08-01 chinese/reciteword: Looks like an abandonware, no more public distfile 2011-08-01 chinese/tocps: No more pulic distfiles 2011-08-01 chinese/xttmgr: Looks like an abandonware, no more public distfile 2011-08-01 comms/mserver: Looks like an abandonware, no more public distfiles 2011-08-01 comms/qicosi: Looks like an abandonware, no more public distfile 2011-08-01 comms/sms_client: Looks like an abandonware, no more public distfile 2011-08-01 comms/smstools: Looks like an abandonware, no more public distfile 2011-08-01 converters/siconv: Looks like an abandonware, no more public distfiles 2011-08-01 converters/utf8conv: Looks like an abandonware, no more public distfile 2011-08-01 databases/pgcluster: Looks like an abandonware, no more public distfile 2011-08-01 databases/py-MySQL: Please use databases/py-MySQLdb instead 2011-08-01 databases/py-SQLDict: Looks like an abandonware, no more public distfile 2011-08-01 databases/py-rrdpipe: Looks like an abandonware, no more public distfile 2011-08-01 databases/sybase_ase: no more public distfiles available
* - Update to 0.39sunpoet2011-08-013-3/+34
|
* Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,linimon2011-07-212-2/+2
| | | | | | | | | | | | | | | | remove support for them from bsd.java.mk. As Jikes is not available in Java 1.5 or higher, remove it from bsd.java.mk too (suggested by hq@) and from the ports which used it (only occurences were USE_JIKES=no). Support for the Blackdown VM is also removed, as it is not available in Java 1.5 and higher. Also remove the mapping from Java 1.1-1.4 to Java 1.5+ in bsd.java.mk to detect old, broken ports; therefore bump the minimal value of JAVA_VERSION to 1.5. While here, replace static values of JAVA_VERSION in files/*.in by %%JAVA_VERSION%% . PR: ports/158969 Submitted by: rene Tested on: pointyhat-west -exp
* - Update to 0.38sunpoet2011-07-163-50/+64
| | | | - Sort MAN3 and PLIST
* - Update to 1.20sunpoet2011-07-132-73/+71
| | | | | | - Sort RUN_DEPENDS and MAN3 Changes: http://search.cpan.org/dist/Bio-MAGETAB/Changes
* - kick MD5miwi2011-07-021-1/+0
|
* - Use USERS and GROUPScrees2011-06-282-47/+3
| | | | | | | | - Use ${SH} instead of calling script directly PR: ports/157575 Submitted by: Chris Rees (utisoft@gmail.com) Approved by: tabthorpe (co-mentor)
* - Fix *_DEPENDS after the repocopy of databases/py-sqlalchemynivit2011-06-251-1/+2
| | | | | (This port doesn't yet support SQLAlchemy 0.7.X) - Bump PORTREVISION
* Switch dependency on povray to povray-meta port.makc2011-06-211-2/+2
| | | | Remove MD5 sum while I'm here.
* Another bunch of deprecation: no more public distfiles and/or abandonwarebapt2011-06-171-0/+3
|
* Another bunch of deprecation: no more public distfiles and/or abandonwarebapt2011-06-163-0/+9
|
* - Update to 0.5wen2011-06-102-3/+3
| | | | ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.5/Changes
* Update to 1.1.04jlaffaye2011-06-105-126/+35
| | | | | | PR: ports/157527 Submitted by: Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> Approved by: bapt (mentor)
* deprecate and set expiration date:bapt2011-06-091-0/+3
| | | | it is an abandonware and it is unmaintain for very long
* - Update to 0.4.3wen2011-06-022-3/+3
|
generated by cgit (git 2.34.1) at 2024-11-27 16:41:31 +0800