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* ${ENV} does not exist, it is called ${SETENV}.mat2015-04-131-1/+1
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* biology/seaview: Unbreak -- it fetches finemarino2015-04-111-4/+1
| | | | | | | | The second MASTER_SITES entry worked fine, so this must have been a transient fetch problem. I removed the first entry which is still failing though. Approved by: blanket
* biology/platon: Upgrade from 05 MAR 2015 => 30 MAR 2015 to unbreakmarino2015-04-112-6/+5
| | | | | | | | | As noted by previous commit, upstream rerolls the same distfile frequently. When FreeBSD cache was removed, the port broke. I'm fixing it again with a new digest, but I'm also defining DIST_SUBDIR, which is the correct thing to do with rerolls-by-policy. Also I removed the bad backup MASTER_SITES and tested in poudriere.
* biology/p5-Bio-ASN1-EntrezGene: bump PORTEPOCHmarino2015-04-111-0/+1
| | | | | | | Apparently in some world I don't live in 1.091 > 1.70 pkg needs this port's epoch to be bumped reported by: wen
* biology/p5-Bio-ASN1-EntrezGene: Upgrade 1.09 => 1.70 to unbreakmarino2015-04-113-15/+15
| | | | | | | While here, reset the port. The last time the maintainer was seen was in 2005, when the port was created. Also, rewrap the package description such that it keeps within 75 characters; also move the url so it won't wrap across lines.
* Update biology/paml to 4.8a and unbreak.brd2015-04-102-7/+5
| | | | | | PR: 199264 Submitted by: Joseph Mingrone <jrm@ftfl.ca> Approved by: bdrewery (mentor)
* Convert bsd.gnustep.mk to USES=gnustepbapt2015-04-091-4/+2
| | | | | | | | | | | | | Simplify gnustep ports Hook into the regular ports framework: - LIB_DEPENDS for library dependencies - Use regular USE_LDCONFIG Reuse USES=objc (automatic) USE_GNUSTEP is now a macro to set the dependencies and build feature needed. Accepted arguments: back base build gui Merge deskutils/preferencepanes into deskutils/systempreferences
* Mark as broken unfetchable portsbapt2015-04-0610-0/+18
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* biology/ruby-bio: mark broken with ruby 2.2swills2015-04-031-1/+7
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* - Remove deprecated optionamdmi32015-04-021-9/+16
| | | | | | | | | - Tweak compiler flags - Add LICENSE - Pass maintainership to submitter PR: 199066 Submitted by: jwbacon@tds.net
* biology/seqtools: 4.32 -> 4.33pi2015-04-012-3/+3
| | | | | - Blixem/Dotter Multi-dotter support; may now start multiple dotters from blixem
* - Add LICENSEsunpoet2015-03-291-4/+6
| | | | - Space/Tab fix
* Upgrade from 3.6.6 to 3.6.7. Be sure to not extract the zlibmi2015-03-252-3/+4
| | | | subdirectory.
* 6 ports categories: Remove $PTHREAD_LIBSmarino2015-03-253-10/+8
| | | | | | Categories: cad, devel, java, x11-fm, biology, deskutils approved by: PTHREAD blanket
* biology/seaview: Update version 4.5.3.4=>4.5.4bofh2015-03-243-41/+5
| | | | - Remove dependency for libpdf as removed by upstream
* - Update to version 1.16.1danfe2015-03-233-8/+8
| | | | | | | - Explicitly list all required Qt components in USE_QT4 instead of relying on them being silently picked up through `www/webkit-qt4' dependency - Group *_build components together while here - Remove one REINPLACE_CMD call that is no longer needed
* biology/segan: Limit GCC to 4.8 while waiting for updatemarino2015-03-211-1/+1
| | | | | | | | | Due to questionable c++, GCC 4.9 and newer cannot build seqan. An update has been in the works that will enable clang compilers and all versions of GCC to build seqan, but it is not quite ready yet. While waiting for it, limit the version of GCC used to 4.8. PR: 196851
* For the new USE_GITHUB with only GH_TAGNAME set default DISTNAME tobdrewery2015-03-211-2/+2
| | | | | | | | | | include GH_PROJECT/GH_ACCOUNT/GH_TAGNAME. This prevents the distfile having the same name despite changing one of these values and causing a bad checksum. Differential Revision: https://reviews.freebsd.org/D2103 Reviewed by: mat With hat: bdrewery
* Convert to new USE_GITHUB.mat2015-03-202-11/+4
| | | | | | While there, cleanup. Sponsored by: Absolight
* Fix packaging as a user (pkg already takes care of credentials)bapt2015-03-191-2/+2
| | | | Strip binaries
* - Simplify MASTER_SITESamdmi32015-03-171-3/+9
| | | | - Strip libraries
* biology/seaview: UNBREAKbofh2015-03-163-15/+38
| | | | | | | | | | - Update version 4.5.2=>4.5.3.4 - Add LICENSE (GPLv3) - Remove PDFLIBS as OPTIONS as it is no loner an optional requirement PR: 198602 Submitted by: pi Approved by: bapt marino (implicit)
* Some OCD cleanups on some of the perl@ ports.adamw2015-03-135-984/+976
| | | | | | | | | | | | | - Remove dependencies in core - Put testing depends in TEST_DEPENDS - Remove unnecessary bsd.port.options.mk inclusions - Remove checks for Perl versions that no longer exist in the ports tree - Sort plists, some of which were so jumbled that I have to assume the plist was randomized before committing A lot of the plist changes in this commit are moving PERL5_MAN3 after SITE_PERL. It's repo churn now, but it makes updating the ports later far easier.
* - Add empty directory to plistamdmi32015-03-111-0/+1
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* Update from 7.1.1 to 7.1.2.mi2015-03-112-3/+3
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* Unbreak by upgrading to March 5, 2015 "release" from upstream.mi2015-03-095-106/+103
| | | | | | | | | | | | Reduce restrictions from RESTRICTED to NO_CDROM -- the licensing allows use by academic community as long as it is not redistributed. Upstream still do not version their "releases", so next time they reroll the tarball, the download will start breaking again. But this time, it will be possible to fetch it from FreeBSD mirrors. Hide most of the optional data files under the DOCS-option and streamline various build-related scriptlets.
* Unbreak by updating from 7.0.1 to 7.1.1. Hopefully, the authors willmi2015-03-092-6/+4
| | | | | | | stop rerolling releases (and breaking downstream checksums) now. While here, allow parallel builds (seems to work again now) and stop extraction of unused subdirectories.
* biology/samtools: update 1.1 -> 1.2robak2015-03-062-4/+5
| | | | | PR: 198292 Submitted by: Reed Cartwright <cartwright@asu.edu>
* biology/htslib: update 1.1 -> 1.2.1robak2015-03-066-23/+45
| | | | | PR: 198291 Submitted by: Reed Cartwright <cartwright@asu.edu>
* Add a run dependency used by update_blastdb.plarved2015-03-061-1/+2
| | | | | PR: 198331 Submitted by: maintainer
* - Update to 1.13.10danilo2015-03-043-4/+4
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* Remove Authors from pkg-descrbapt2015-03-031-1/+0
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* Remove TEST dependency on p5-Test-Simple when the version in core isadamw2015-02-271-1/+0
| | | | | | sufficient. Thanks to az for showing me the light here.
* Update Unipro UGENE to version 1.16.0 (documentation was also rerolled).danfe2015-02-243-9/+18
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* Mark BROKEN: Fails to link, tries to use internal fltk symbolsantoine2015-02-211-0/+2
| | | | | | | | | | | c++ -o seaview seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o Fl_Native_File_Chooser_FLTK.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o \ -L/usr/local/lib -lfltk_images -lfltk \ -lXft -lXext -lfontconfig -ljpeg -lpng -lXinerama -L/usr/local/lib -lpdf \ -lX11 -lm -lz -pthread seaview.o: In function `clipboard_contains_alignment(char const*)': seaview.cxx:(.text+0x1c14): undefined reference to `fl_selection_buffer' Reported by: pkg-fallout
* biology/seqtools: 4.31 -> 4.32pi2015-02-122-3/+3
| | | | | | | | | | | | | | | - Blixem o Previously-unsupported GFF feature types can now be displayed as a new 'basic feature' type. o Styles are now applied to the detail view as well as the big picture, so feature display is more consistent across the two views. o Fix a bug where styles were not being applied to dynamically-loaded features. - Dotter o Added a 'maximise' button for the greyramp tool. o Small fixes to inconsistencies in context-sensitive menus and keyboard shortcuts.
* Mark BROKEN: Checksum and size mismatchantoine2015-01-311-0/+1
| | | | Reported by: pkg-fallout
* - Update to 3.6.6wen2015-01-313-5/+5
| | | | | PR: 197039 Submitted by: antont@inbox.lv
* - Update to 1.13.9danilo2015-01-313-4/+4
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* misc/otter & biology/ariadne: Not jobs safemarino2015-01-221-0/+2
| | | | | | The otter port tries to build libotter.a before an object is completely built (share.o in my case) and ariadne tries to start building in a directory before it is created (under multiple jobs).
* biology/py-biopython:makc2015-01-201-3/+5
| | | | | | - Convert to options framework Approved by: portmgr blanket
* Designatate 4 ports as unsafe for parallel buildingmarino2015-01-201-0/+1
| | | | | | All had similar errors that it couldn't find something during the build, yet built on a subsequent pass with no adjustments. Most I've seen before on previous bulk runs.
* - Pass maintainership to submitterwen2015-01-191-1/+1
| | | | | PR: 196859 Submitted by: Joseph Mingrone<jrm@ftfl.ca>
* - Simplify Makefilesunpoet2015-01-192-135/+130
| | | | | | - Use tab instead of space - Sort PLIST - Pass maintainership to perl@
* - Update to 1.13.8danilo2015-01-143-4/+4
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* Mark BROKEN: Unfetchableantoine2015-01-101-0/+1
| | | | Reported by: pkg-fallout
* Update to version 1.15.1.danfe2015-01-063-10/+10
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* biology/tinker: 6.2.6 -> 7.0.1pi2015-01-046-65/+94
| | | | | PR: 196376 Submitted by: Nikola Kolev <koue@chaosophia.net>
* - Convert USE_PYTHON -> USES leftovers missed in the previous commitsmva2015-01-041-1/+1
| | | | | Spotted by: antoine With hat: python
* Update to upstream version 36riggs2015-01-022-7/+6
| | | | | PR: 196339 Submitted by: koue@chaosophia.net
* Remove expired ports:rene2015-01-017-166/+0
| | | | | | | 2015-01-01 biology/boinc-simap: Project shutting down, see http://boincsimap.org/boincsimap/forum_thread.php?id=88 2015-01-01 security/openssh-portable-base: Overwrite-base option/port/pkg will be removed. There is no real need for foot-shooting. 2015-01-01 devel/cedet: Fails to build, use Emacs' builtin cedet package instead 2015-01-01 devel/ecb: does not work with newer Emacs versions, use the elpa package instead
* Fix PKGNAMEPREFIX of biology/ncbi-blast+, so that the resulting package isgrembo2014-12-311-1/+2
| | | | | | named like the port. Approved by: mentors (implicit)
* Rename biology/ncbi-blast to biology/ncbi-blast+grembo2014-12-315-2/+2
| | | | Approved by: mentors (implicit)
* - Update to 5.11.0wen2014-12-303-5/+28
| | | | | PR: 196377 Submitted by: koue@chaosophia.net
* Convert to USES=autoreconfbapt2014-12-291-2/+2
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* Bump portrevision after png updatebapt2014-12-263-1/+3
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* Change libpng15.so to libpng.so in LIB_DEPENDS to prepare the upgradeantoine2014-12-263-4/+4
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* Change my non-FreeBSD MAINTAINER mail to bofh@bofh2014-12-241-1/+1
| | | | Approved by: bapt
* Cleanup plistbapt2014-12-217-8/+0
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* - Upadate biology/mopac to version 1.15pawel2014-12-176-41/+17
| | | | | | | | | - Bump affected ports - Switch ports to new mastersite, add LICENSE - Reformat ports pkg descriptions PR: 194493 Submitted by: tkato432@yahoo.com
* Samtools implements various utilities for post-processing alignments in thepawel2014-12-168-0/+169
| | | | | | | | | | SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction with bcftools), and a simple alignment viewer. WWW: http://www.htslib.org/ PR: 195592 Submitted by: Reed A. Cartwright <cartwright@asu.edu>
* HTSlib is an implementation of a unified C library for accessing common filepawel2014-12-156-0/+131
| | | | | | | | | | formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing data. It is the core library used by samtools and bcftools. WWW: http://www.htslib.org/ PR: 195591 Submitted by: Reed A. Cartwright <cartwright@asu.edu>
* biology/seqtools: 4.30 -> 4.31pi2014-12-142-3/+3
| | | | Some changes to sqlite dependencies
* - Update to 2.39wen2014-12-072-4/+3
| | | | Changes: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.39/Changes
* - Update to 0.58wen2014-12-073-8/+9
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* - Update to 3.6.5wen2014-12-063-6/+19
| | | | - Reset maintainer to ports@
* Update to version 1.15.0.danfe2014-12-033-16/+34
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* Change the way Perl modules are installed, update the default Perl to 5.18.mat2014-11-2623-125/+125
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Before, we had: site_perl : lib/perl5/site_perl/5.18 site_perl/perl_arch : lib/perl5/site_perl/5.18/mach perl_man3 : lib/perl5/5.18/man/man3 Now we have: site_perl : lib/perl5/site_perl site_arch : lib/perl5/site_perl/mach/5.18 perl_man3 : lib/perl5/site_perl/man/man3 Modules without any .so will be installed at the same place regardless of the Perl version, minimizing the upgrade when the major Perl version is changed. It uses a version dependent directory for modules with compiled bits. As PERL_ARCH is no longer needed in plists, it has been removed from PLIST_SUB. The USE_PERL5=fixpacklist keyword is removed, the .packlist file is now always removed, as is perllocal.pod. The old site_perl and site_perl/arch directories have been kept in the default Perl @INC for all Perl ports, and will be phased out as these old Perl versions expire. PR: 194969 Differential Revision: https://reviews.freebsd.org/D1019 Exp-run by: antoine Reviewed by: perl@ Approved by: portmgr
* biology/seqtools: 4.29 -> 4.30pi2014-11-042-4/+3
| | | | | | - Blixem o Fix potential crash with internal processing o Fix two bugs in data input
* - Update to version 3.696pawel2014-11-023-30/+18
| | | | | | | | - Add LICENSE, no EXAMPLES included in distfile now - Rework pkg-descr, remove author info - it's available on homepage PR: 194163 Submitted by: tkato432@yahoo.com
* Cleanup plistbapt2014-10-2036-644/+0
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* - Convert ports from benchmarks/ and biology/ to new USES=pythonmva2014-10-196-16/+10
| | | | Approved by: portmgr (implicit)
* - Fix various distinfo errorsak2014-10-161-1/+0
| | | | | | | | | - Remove unused USE_* knobs - Fix typos in USE_* knobs - Remove empty lines after .include <bsd.port.mk> Approved by: portmgr (bapt) Differential Revision: https://reviews.freebsd.org/D911
* biology/seqtools: 4.28 -> 4.29pi2014-10-163-4/+3
| | | | | | | | | | | - Blixem o Added the facility to run Dotter on an ad-hoc sequence (RT:408836). o Added the facility to run Dotter against a transcript. - Dotter Minimise the greyramp tool to a simple contrast slider. Use Ctrl-G to toggle between this and the full greyramp tool. - Belvu Fix a bug with tree bootstrapping in Belvu.
* Update to version 1.14.2.danfe2014-10-133-4/+13
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* - Update to 0.10wen2014-10-125-58/+32
| | | | | PR: 194309 Submitted by: jwbacon@tds.net(maintainer)
* Fix pkg-plistrene2014-10-081-0/+3
| | | | Submitted by: bapt
* biology/boinc-simap: clean up pkg-plistrene2014-10-081-7/+5
| | | | Requested by: bapt
* Add new port biology/ncbi-blastmarino2014-10-075-0/+3961
| | | | | | | | | | | | PR: 190854 Submitted by: Jason Bacon The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches. BLAST can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.
* - Update to 2.6.0sunpoet2014-10-041-1/+1
| | | | | | | | | | | | | - Update MASTER_SITES - Add my LOCAL to MASTER_SITES - Use USE_CSTD - Use MAKE_CMD - Reformat pkg-descr - Update WWW - Take maintainership - Bump PORTREVISION for devel/protobuf shlib change Changes: https://code.google.com/p/protobuf/source/browse/trunk/CHANGES.txt
* - any version for RUN_DEPENDSdinoex2014-09-211-2/+2
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* - update RUN_DEPENDS for rubygems-dbidinoex2014-09-211-2/+2
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* biology/boinc-simap: Deprecate, project shutting down on 2015-01-01rene2014-09-201-0/+3
| | | | Obtained from: http://boincsimap.org/boincsimap/forum_thread.php?id=88
* devel/glib12 x11-toolkits/gtk12:tijl2014-09-131-1/+1
| | | | | | | - Convert to USES=libtool and bump dependent ports - Add INSTALL_TARGET=install-strip - Remove patches that renamed include directories and libraries so they didn't conflict with early development versions of glib/gtk 2.0
* Update the default version of GCC in the Ports Collection from GCC 4.7.4gerald2014-09-1118-13/+18
| | | | | | | | | | to GCC 4.8.3. Part II, Bump PORTREVISIONs. PR: 192025 Tested by: antoine (-exp runs) Approved by: portmgr (implicit)
* Fix MASTER_SITESantoine2014-09-051-1/+1
| | | | Submitted by: tijl@
* Second run at cleaning out non staged ports without pending PRbapt2014-09-025-69/+0
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* Remove non staged ports without pending PR from b*bapt2014-09-0115-1973/+0
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* - Update Unipro UGENE and documentation to version 1.14.0danfe2014-09-017-226/+71
| | | | | | | - Remove patches integrated upstream (it's nice to have direct contact) - Sort USES and pkg-plist, cleanup Makefile a bit while here Approved by: maintainer (implicit)
* biology/crux: stage, modernize, add license (BSD[23]CLAUSE), cleanupsrene2014-08-274-46/+63
| | | | | PR: 193026 Submitted by: Ports Fury
* - Stagifyamdmi32014-08-268-3/+124
| | | | - Fix build
* update ports:pi2014-08-2431-1187/+735
| | | | | | | | | | | | biology/phrab biology/phred biology/consed Although these programs are licensed freely for academic and nonprofit purposes, users have to contact the authors to obtain the tarballs. PR: 191336 Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
* Fix build. Hopefully it doesn't break the app.adamw2014-08-221-0/+11
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* Fix build on -current by un-clobbering LDFLAGS. Also, don'tadamw2014-08-162-4/+13
| | | | mute installation commands.
* - Update to 5.10.2wen2014-08-104-270/+232
| | | | | PR: 192198 Submitted by: tkato432@yahoo.com
* Convert the Python framework bits to USES=python.mva2014-08-091-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Please use USES=python instead of USE_PYTHON. USE_PYTHON=yes becomes USES=python USE_PYTHON=2.7+ becomes USES=python:2.7+ USE_PYTHON_BUILD=3.3 becomes USES=python:3.3,build ... A new PYTHON_FEATURES variable was added, which enables certain features for a port and replaces some knobs at the same time; PYTHON_FEATURES=distutils replaces USE_PYDISTUTILS PYTHON_FEATURES=autoplist replaces PYDISTUTILS_AUTOPLIST PYTHON_FEATURES=py3kplist replaces PYTHON_PY3K_PLIST_HACK PYTHON_FEATURES=noegginfo replaces PYDISTUTILS_NOEGGINFO PYTHON_FEATURES=concurrent replaces PYTHON_CONCURRENT_INSTALL PYTHON_FEATURES=pythonprefix replaces USE_PYTHON_PREFIX Some knobs have been deprecated and are to be removed in the near future: PYTHON_MASTER_SITES - use MASTER_SITE_PYTHON instead PYTHON_PKGNAMESUFFIX - use PYTHON_PKGNAMEPREFIX instead PYDISTUTILS_INSTALLNOSINGLE - deprecated without replacement Some knobs have been removed completely: PYTHON_MASTER_SITE_SUBDIR PYTHON_DISTNAME PYTHON_WRKSRC Several variables specific to the Python framework are no longer passed to the build environment to avoid polluting dependency builds. PYTHON_VERSION is not passed to .MAKEFLAGS anymore PYTHON_DEFAULT_VERSION, PYTHON_DEFAULT_PORTVERSION and PYTHONBASE are not passed to the make environment anymore The conversion required a couple of ports to be updated to fit the changes and new requirements. Those included "bsd.python.mk" directly or contained checks in places, for which the USES framework would fail to provide correct values. Python modules directly using the upstream Python package (such as py-tkinter or py-sqlite3) were updated to avoid using the now unnecessary and remmoved knobs from "bsd.python.mk". Phabric: D399 exp-run: 167368 192357 PR: 167368 192357 Reviewed by: antoine, wg Exp-run award: antoine With hat: python@ Approved by: portmgr
* - Switch to USES=libtool, drop .la filesamdmi32014-08-072-4/+4
| | | | Approved by: portmgr blanket
* USES=execinfobapt2014-08-052-6/+2
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* biology/p5-bioperl-run: 1.6.1 -> 1.6.901, unbreak, stagifypi2014-08-045-217/+296
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* biology/p5-bioperl: fix pkg-descr sidenote linkpi2014-08-041-1/+1
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* Add a DOCS option.adamw2014-08-042-5/+7
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* biology/seqtools: 4.27 -> 4.28pi2014-07-312-3/+3
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* Convert a bunch of EXTRACT_SUFX=... into USES=tar:...adamw2014-07-308-16/+8
| | | | Approved by: portmgr (not really, but touches unstaged ports)
* Convert a bunch of USE_BZIP2 to USES=tar:bzip2adamw2014-07-302-4/+2
| | | | Approved by: portmgr (not really, but touches unstaged ports)
* Rename biology/ patch-xy patches to reflect the files they modify.adamw2014-07-2811-13/+13
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* - Update to 1.6.924 [1]wen2014-07-273-10/+11
| | | | | | | - Reset maintainer to perl@ PR: 192088 [1] Submitted by: Kurt Jaeger<pi@FreeBSD.org> [1]
* Really fix.mat2014-07-261-2/+0
| | | | Sponsored by: Absolight
* Fix build.mat2014-07-251-1/+1
| | | | Sponsored by: Absolight
* biology/p5-Bio-Graphics: 2.37 -> 2.38pi2014-07-242-3/+3
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* Reset maintainership for ports not staged with no pending PRbapt2014-07-246-6/+6
| | | | With hat: portmgr
* - Switch to USES=libtool, drop .la filesamdmi32014-07-232-3/+4
| | | | | | - Fix shebangs Approved by: portmgr blanket
* biology/mummer: Use OPSYS with OSVERSIONmarino2014-07-201-1/+1
| | | | | | I don't think selecting clang as a function of OSVERSION is generally desired, but if it's going to happen, make sure FreeBSD-specific conditions are limited to FreeBSD by comparing OPSYS first.
* biology/garlic: Stage properly to unbreakmarino2014-07-171-7/+5
| | | | | | | | | The main problem was the WRKDIR is not within STAGEDIR. Fix this while moving all the directory creation steps into one. While here set TAR to use switches as outlined in its man page. Also, the permission setting in stagedir is not necessary, so it's simply been removed.
* Add OPTIONS_DEFINE=DOCS for ports with %%PORTDOCS%% in the plist.adamw2014-07-161-0/+2
| | | | | | | Where possible, correct a few instances where PORTDOCS was being used to flag stuff in EXAMPLESDIR. For some ports, mostly those owned by ruby@, PORTDOCS is applied to pretty much everything whether it's documentation or example.
* Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.adamw2014-07-152-14/+21
| | | | While here, use OPTIONS helpers and re-enable manpage installation.
* biology/platon: Unbreak by hosting known distfiles elsewheremarino2014-07-132-6/+9
| | | | | | | | | The distfiles are regenerated often, too frequently to be suitable for ports. Fonz has decided to host the tarball of a known version to restore this unmaintained port. PR: 191685 Submitted by: Fonz
* biology/seqtools: 4.26 -> 4.27pi2014-07-132-4/+3
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* Use gcc on all platforms.adamw2014-07-111-6/+1
| | | | | PR: 191692 Submitted by: maintainer
* Stagify.vanilla2014-07-071-6/+5
| | | | Approved by: portmgr@ (blanket)
* Missed a NOPORTDOCS.adamw2014-07-051-3/+4
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* Remove NOPORTDOCS and NOPORTEXAMPLES from unstaged ports. Stage a couple whileadamw2014-07-051-21/+19
| | | | | | we're here. Remove any other references to NOPORT*. Approved by: portmgr (blanket for modernization)
* - Chase database/sqlite3 slib bumpmiwi2014-06-281-0/+1
| | | | Approved by: portmgr (myself)
* Fix compilation on 10+ (clang)miwi2014-06-272-2/+10
| | | | | | Fix format of WWW entry in pkg-descr PR: 190798
* - Mark BROKENwen2014-06-261-0/+2
| | | | Approved by: portmgr@(implicit)
* Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mkantoine2014-06-251-1/+2
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* Use MAKE_CMD instead of GMAKEbapt2014-06-251-2/+2
| | | | With hat: portmgr
* Mark as broken: no distinfo providedbapt2014-06-231-2/+1
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* Mark as broken: no distinfo providedbapt2014-06-231-3/+1
| | | | With hat: portmgr
* Fix shebang line in Perl and Python scripts.rakuco2014-06-201-13/+6
| | | | | PR: 191146 Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
* Mark BROKEN: Fails to configureantoine2014-06-201-0/+2
| | | | | | | | | ===> Configuring for p5-bioperl-run-1.6.1_4 Invalid prerequisite condition '0/processing XML data/Bio::Tools::Run::EMBOSSacd' for XML::Twig at /usr/local/lib/perl5/site_perl/5.16/Module/Build/Base.pm line 1702. *** [do-configure] Error code 25 Reported by: pkg-fallout With hat: portmgr
* biology/blast: Deprecate for removal after 4 September 2014marino2014-06-191-0/+3
| | | | | | | | This unstaged port will be removed for legal reasons. PR: 190626 Submitted by: Muhammad Rahman Approved by: portmgr (implicit)
* Update to 1.2.10.rakuco2014-06-183-35/+23
| | | | | PR: 191129 Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
* Update to 3.8.31.rakuco2014-06-185-89/+37
| | | | | PR: 191130 Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
* Reset the 99 ports still listed under sylvio@marino2014-06-121-1/+1
| | | | | | | | | | | Sylvio's last commit was 17 months ago, a full 5 months after all of his ports could have been reset per policy. Given the push to complete staging (48 ports are still unstaged, something like 70+ have already been staged by other committers) and given that PRs are automatically assigned but never addressed, it's better just to reset all the ports and PRs so that it's clear to others that these ports are free to maintain. Approved by: portmgr (implicit)
* Remove all the bootstrap files (.bs) from the plists.mat2014-06-102-3/+0
| | | | | | | | | | Starting with perl 5.20, they're not installed any more if empty, and on FreeBSD, they're (always ?) empty. PR: 190681 Submitted by: mat Exp-Run by: antoine Sponsored by: Absolight
* Remove indefinite articles and trailing periods from COMMENT, plusolgeni2014-06-096-6/+6
| | | | | | | minor COMMENT typos and surrounding whitespace fixes. Categories A-C. CR: D196 Approved by: portmgr (bapt)
* Remove all space characters from Makefile assignments.olgeni2014-06-091-1/+1
| | | | | | | No functional changes included. CR: D193 (except math/sedumi) Approved by: portmgr (bapt)
* Stagify, remove BROKEN.vanilla2014-06-072-112/+107
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* - Update to 6.6.0miwi2014-06-055-834/+1183
| | | | | | | - Stage support PR: 190508 Submitted by: Muhammad Moinur Rahman
* Unbreakantoine2014-06-051-1/+1
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* - Update to 4.5.2miwi2014-06-042-5/+5
| | | | | | - Pass maintainership to submitter PR: 190564
* Update to 0.5.1 snapshot 20100824bapt2014-06-034-8/+49
| | | | | | | For the story when moved to google code the project released a version 0.5 which was newer than the 0.5.1 from earlier hosting To be consistent named it 0.5.1s20100824 (following what debian did) Switch treeviewx to use unicode version of wx Add a patch from Ubuntu to fix loading trees.
* - add stage supportohauer2014-06-011-5/+1
| | | | - adjust BSDn license
* - add stage supportohauer2014-06-011-12/+6
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* - add stage supportohauer2014-06-011-22/+16
| | | | | - add OPTION for X11 - bump PORTREVISION
* - add stage supportohauer2014-06-011-6/+3
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* - add stage supportohauer2014-06-011-16/+4
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* - add stage supportohauer2014-06-011-21/+8
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* - I forgot to svn add a new patchdanilo2014-06-011-0/+10
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* - Update from 1.13.5 to 1.13.7danilo2014-06-013-9/+9
| | | | | - Add libtool to USES - Take maintainership
* Add DOCS and EXAMPLE options to biology/mafftmilki2014-05-311-0/+2
| | | | | | PR: ports/190161 Submitted by: "Reed A. Cartwright" <cartwright@asu.edu> (maintainer) Approved by: swills (maintainer)
* - Update to 1.6.923wen2014-05-305-1532/+1440
| | | | | | | - Add STAGE support PR: 190342 Submitted by: Muhammad Moinur Rahman <5u623l20@gmail.com>
* biology/embassy: specify post-extraction with ${TAR}marino2014-05-291-1/+1
| | | | | | | | | | | | It's possible that EXTRACT_CMD won't be predefined in the near future in order to support distfiles in multiple formats. We know the post- extraction tool needs to be tar, so let's specify it directly. This port needs staging. It doesn't like like a quick job so I'm leaving that to the listed maintainer. Approved by: infrastructure improvements blanket Approved by: portmgr (implicit) (to skip stage check)
* Convert to USES=dos2unixbapt2014-05-261-2/+2
| | | | With hat: portmgr
* Multiple ports: reset maintainerseadler2014-05-262-2/+2
| | | | | | | | | | | | | | Maintainers for these ports have been notified on 5 separate occasions over the course of several months about pending actions required. We really appreciate the time and effort you put in to maintain these ports. If you are still interested in helping to maintain these ports just reply to me or file a PR and I will happily assign the port to you again. Approved by: portmgr (implicit)
* - Update to 4.5.1miwi2014-05-213-8/+13
| | | | | PR: 187975 Submitted by: Ports Fury
* - Update to 7.149amdmi32014-05-213-32/+35
| | | | | | | | - Clarify LICENSE - Stagify PR: 189746 Submitted by: "Reed A. Cartwright" <cartwright@asu.edu> (maintainer)
* Quote ${CC} and similar variables in MAKE_ARGS.tijl2014-05-211-1/+1
| | | | Reported by: Dominic Fandrey <kamikaze@bsdforen.de>
* - update to 1.31jadawin2014-05-162-3/+3
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* - Update to 5.10.0wen2014-05-133-6/+39
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* - Update to 5.9.0 [1]wen2014-05-133-40/+263
| | | | | | | | | - Stage support [1] - Add LICENSE [1] - Reset maintainer to port@ PR: 188554 [1] Submitted by: Muhammad Moinur Rahman <5u623l20@gmail.com> [1]
* Replace maintainer's email address with one that seems to workantoine2014-05-114-4/+4
| | | | With hat: portmgr
* Catch a couple of missing convertsion to :tu/:tlbapt2014-05-051-1/+1
| | | | | Submitted by: ak With hat: portmgr
* Support stagebapt2014-05-051-20/+9
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* Convert all :U to :tu and :L to :tlbapt2014-05-051-3/+3
| | | | | | | | | | | | | | Since FreeBSD 8.4 and FreeBSD 9.1 make(1) do support :tu and :tl as a replacement for :U and :L (which has been marked as deprecated) bmake which is the default on FreeBSD 10+ only support by default :tu/:tl a hack has been added at the time to support :U and :L to ease migration. This hack is now not necessary anymore Note that this makes the ports tree incompatible with make(1) from FreeBSD 8.3 or earlier With hat: portmgr
* biology/seqtools: 4.25 -> 4.26, fix broken distinfo by upgradingpi2014-05-032-4/+5
| | | | | Submitted by: pi (myself) Approved by: jadawin (mentor)
* - Stage support [1]wen2014-05-023-1064/+5
| | | | | | | | | - Pet portlint [1] - Add LICENSE - Convert to PYDISTUTILS_AUTOPLIST PR: 188819 [1] Submitted by: Bartek Rutkowski <ports@robakdesign.com> [1]
* biology/seqtools: 4.24 -> 4.25pi2014-05-022-5/+4
| | | | | | PR: ports/186299 Submitted by: pi (myself) Approved by: jadawin (mentor)
* - Stageswills2014-04-272-1138/+2
| | | | | | | | | | - Drop easy_install - Use auto pkg-plist - Delete pkg-plist PR: ports/188818 Submitted by: Bartek Rutkowski <ports@robakdesign.com> Approved by: portmgr@ (blanket)
* - Update to version 1.13.5miwi2014-04-264-43/+52
| | | | | PR: 188863 Submitted by: ports fury
* - Un-break fetch stage: the name scheme of the source tarballs has changedriggs2014-04-235-12/+34
| | | | | | | | | | | | | - Add LICENSE* - Remove conflict with hunspell: - Rename the 'analyze' binary to 'analyze_t' - put a note in pkg-message.in - Pet portlint PR: ports/187569 Submitted by: Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp> Approved by: thierry (mentor) MFH: 2014Q2
* Remove expired ports:rene2014-04-1812-635/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 2014-04-16 ports-mgmt/pkgsearch: Upstream disappeared 2014-04-17 science/flounder: Unmaintained since 2002 2014-04-17 security/nbaudit: Unmaintained since 2002 2014-04-17 security/saint: Unmaintained since 2002 2014-04-17 graphics/gozer: Unmaintained since 2002 2014-04-17 misc/pdfmap: Unmaintained since 2002 2014-04-17 devel/showgrammar: Unmaintained since 2002 2014-04-17 biology/libgenome: Unmaintained since 2002 2014-04-17 deskutils/narval: Unmaintained since 2002 2014-04-17 devel/fampp: Unmaintained since 2002 2014-04-17 net-p2p/py-fngrab: Unmaintained since 2002 2014-04-17 misc/wmfirew: Unmaintained since 2002 2014-04-17 x11-wm/e16utils: Unmaintained since 2002 2014-04-17 misc/salias: Unmaintained since 2002 2014-04-17 print/latex2slides: Unmaintained since 2002 2014-04-17 lang/sxm: Unmaintained since 2002 2014-04-17 textproc/pybook: Unmaintained since 2002 2014-04-17 mail/mailcrypt: Unmaintained since 2002 2014-04-17 japanese/elvis: Unmaintained since 2002 2014-04-17 devel/prototype: Unmaintained since 2002 2014-04-17 print/wprint: Unmaintained since 2002 2014-04-17 science/euler: Unmaintained since 2002 2014-04-17 multimedia/gopchop: Unmaintained since 2002 2014-04-17 science/gdis: Unmaintained since 2002 2014-04-17 net/googolplex: Unmaintained since 2002 2014-04-17 lang/logo: Unmaintained since 2002 2014-04-17 textproc/roap: Unmaintained since 2002 2014-04-17 x11-wm/afterstep-i18n: Unmaintained since 2002 2014-04-17 games/yamsweeper: Unmaintained since 2002 2014-04-17 net-mgmt/echolot: Unmaintained since 2002 2014-04-17 security/pam_smb: Unmaintained since 2002 2014-04-18 devel/lua-redis-parser: Broken for more than 6 months 2014-04-18 biology/finchtv: Broken for more than 6 months 2014-04-18 net-im/ari-yahoo: Broken for more than 1 year (http://www.icculus.org/ari-yahoo/)
* The FreeBSD x11@ and graphics team proudly presentszeising2014-04-174-3/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | a zeising, kwm production, with help from dumbbell, bdrewery: NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE This update switches over to use the new xorg stack by default on FreeBSD 9 and 10 stable, on osversions where vt(9) is available. It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in /etc/make.conf . FreeBSD 8-STABLE and released versions of FreeBSD still use the old version. A package repository with binary packages for new xorg will be available soon. This patch also contains updates of libxcb and related ports, pixman, as well as some drivers and utilities. Bump portrevisions for xf86-* ports, as well as virtualbox-ose-additions due to xserver version change. Apart from these updates, the way shared libraries are handled has been changed for all xorg ports, as well as libxml2 and freetype, which means ltverhack is gone and as a consequence shared libraries have been bumped. The plan is that this change will make library bumps less likely in the future. All affected ports have had their portrevisions bumped as a consequence of this. Fix some issues where WITH_NEW_XORG weren't detected properly on CURRENT. Update instructions, hardware support, and more notes can be found on https://wiki.freebsd.org/Graphics Thanks to: all testers, bdrewery and the FreeBSD x11@ team exp-run by: bdrewery [1] PR: ports/187602 [1] Approved by: portmgr (bdrewery), core (jhb)
* Remove expired ports:rene2014-04-1313-304/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 2014-04-12 net/pvm++: Unmaintained since 2001 2014-04-12 devel/ixlib: Unmaintained since 2001 2014-04-12 mail/althea: Unmaintained since 2001 2014-04-12 graphics/claraocr: Unmaintained since 2001 2014-04-12 graphics/qvplay: Unmaintained since 2001 2014-04-12 print/guitartex: Unmaintained since 2001 2014-04-12 print/pnm2ppa: Unmaintained since 2001 2014-04-12 graphics/opendis: Unmaintained since 2001 2014-04-12 net/gnome-mud: Unmaintained since 2001 2014-04-12 graphics/maverik: Unmaintained since 2001 2014-04-12 biology/rasmol: Unmaintained since 2001 2014-04-12 mail/mail2procmailrc: Unmaintained since 2001 2014-04-12 science/felt: Unmaintained since 2001 2014-04-12 textproc/pardiff: Unmaintained since 2001 2014-04-12 lang/klone: Unmaintained since 2001 2014-04-12 net/rmsg: Unmaintained since 2001 2014-04-12 net/sharity-light: Unmaintained since 2001 2014-04-12 biology/genpak: Unmaintained since 2001 2014-04-12 net/forg: Unmaintained since 2001 2014-04-12 misc/txt2regex: Unmaintained since 2001 2014-04-12 textproc/ipdf: Unmaintained since 2001 2014-04-12 graphics/plotmtv: Unmaintained since 2001 2014-04-12 devel/happydoc: Unmaintained since 2001 2014-04-12 print/cpp2latex: Unmaintained since 2001 2014-04-12 graphics/svg2swf: Unmaintained since 2001 2014-04-12 devel/flick: Unmaintained since 2001 2014-04-12 mail/smail: Unmaintained since 2001 2014-04-12 net/net-http: Unmaintained since 2001 2014-04-12 security/cfv: Unmaintained since 2001 2014-04-12 graphics/camediaplay: Unmaintained since 2001 2014-04-12 math/umatrix: Unmaintained since 2001
* - Back to the heap, I don't use this port anymoreculot2014-04-121-1/+1
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* Mark as broken unstaged perl portsbapt2014-04-092-0/+2
| | | | With hat: portmgr
* Support stagebapt2014-04-072-32/+16
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* - Update to 0.5.2wen2014-04-062-4/+5
| | | | - Add LICENSE
* - Update to 2.3.6wen2014-04-062-4/+5
| | | | - Reset maintainer to ports@
* - Update to 4.8wen2014-04-053-8/+8
| | | | - Reset maintainer to ports@
* Unbreakantoine2014-03-281-1/+1
| | | | Reported by: pkg-fallout
* - Fix PLISTsunpoet2014-03-262-0/+3
| | | | | | - Bump PORTREVISION for package change Reported by: swills
* - Update to 2.0sunpoet2014-03-262-3/+3
| | | | Changes: http://search.cpan.org/dist/Bio-GFF3/Changes
* Does not build with wx 3.0bapt2014-03-241-3/+3
| | | | | Remove the contrib component which is not required Note that is does not build with the unicode version of wx 2.8 as well
* Add staging supportpawel2014-03-241-12/+5
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* - Add staging supportpawel2014-03-241-19/+9
| | | | - Unmute install commands
* - Add staging supportpawel2014-03-242-31/+31
| | | | - Switch to PORTDOCS
* - Add staging supportpawel2014-03-241-17/+13
| | | | - Strip libraries
* Add staging supportpawel2014-03-242-34/+60
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* - Add staging supportpawel2014-03-241-10/+8
| | | | - Strip library
* Add staging supportpawel2014-03-241-15/+8
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* Add staging supportpawel2014-03-241-8/+5
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* Deprecate: Broken for more than 6 monthsantoine2014-03-191-0/+2
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* Support stagingehaupt2014-03-141-9/+3
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* Support stagingehaupt2014-03-141-2/+2
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* - Convert USE_GMAKE to USESmiwi2014-03-1310-11/+10
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* Deprecate a few old unmaintained portsantoine2014-03-121-0/+2
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* Update the default version of GCC used in the Ports Collection fromgerald2014-03-1112-10/+12
| | | | | | | | | | | GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as well as changing the default in Mk/bsd.default-versions.mk. Part II, Bump PORTREVISIONs. PR: 182136 Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports) Tested by: bdrewery (two -exp runs)
* biology/ssaha: undeprecate, this port fetches and builds fine.rene2014-03-091-3/+0
| | | | Submitted by: Kurt Jaeger via private mail.
* Deprecate a few unmaintained ports (leaf ports, non staged and unmaintained ↵antoine2014-03-092-0/+4
| | | | since more than 12 years)
* Unbreakantoine2014-03-091-1/+0
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* Convert b* to USES=zipbapt2014-03-075-10/+5
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* Convert to dos2unixbapt2014-03-071-1/+1
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* Update to version 1.13.1.danfe2014-03-073-4/+4
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* biology/fasta3: Checked new distfile and regenerated distinfo to unbreakmarino2014-03-022-3/+8
| | | | | | | | | | | Fasta3 distfile was significantly changed. This should have been released as a new version (e.g. 36.3.6e), so it's not clear why the distfile was rerolled. There are significant changes to makefiles, conf files and even a few .c and .h files. They all look like legitimate updates to me though. Set DIST_SUBDIR since this port is now known for rerolling, then regenerate distinfo. Also add Fasta license and bump revision.
* - Update to 35miwi2014-02-274-27/+50
| | | | PR: 184245
* - Update to 5.0.7miwi2014-02-272-24/+21
| | | | | PR: 185942 Submitted by: ports fury
* - Stage supportmiwi2014-02-272-21/+18
| | | | | | | - Update to version 4.4.3 PR: 187041 Submitted by: ports fury
* - Repocopy print/py-reportlab to print/py-reportlab1tota2014-02-251-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to preserve version 1.x and to update to 3.0 print/py-reportlab: - Update print/py-reportlab to 3.0 based on print/py-reportlab2 - Support STAGEDIR - Use PYDISTUTILS_AUTOPLIST * Remove pkg-plist, accordingly - Set CONFLICTS - Add PORTSCOUT - Replace tab with a single space after WWW: in pkg-descr print/py-reportlab1: - Support STAGEDIR - Add PKGNAMESUFFIX not to duplicate ports with the same name - Set CONFLICTS - Use PYDISTUTILS_AUTOPLIST * Remove pkg-plist, accordingly - Make use of PORTDOCS - Set OPTIONS_DEFINE explicitly - Fix include statement - Make docs unconditional to stage - Replace tab with a single space after WWW: in pkg-descr print/py-reportlab2: - Update CONFLICTS - Set PORTSCOUT dependent ports: - Switch dependency from print/py-reportlab to print/py-reportlab1 * biology/py-biopython * deskutils/gourmet * deskutils/griffith * games/pythonsudoku * misc/pdfmap * print/py-trml2pdf * www/py-satchmo PR: ports/186970 Submitted by: tota (myself) Approved by: Muhammad Moinur Rahman (maintainer)
* Remove trailing whitespaces from category biologyehaupt2014-02-2110-10/+10
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* Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most casestijl2014-02-173-15/+13
| | | | | | | | | | | USE_GCC=yes has been omitted though. Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk. Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,... Exp-run: bdrewery Approved by: portmgr (bdrewery)
* Support stagingehaupt2014-02-161-2/+1
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* Support stagingehaupt2014-02-161-14/+7
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* - Support stagingehaupt2014-02-161-9/+7
| | | | - Use shebangfix
* Support stagingehaupt2014-02-161-8/+3
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* Support stagingehaupt2014-02-161-10/+6
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* Fix old makeplist bug.mat2014-02-122-1/+2
| | | | | Pointy hat to: people who blindly use makeplist Sponsored by: Absolight
* According to the Porter's Handbook (5.12.2.3.) default options must be added toehaupt2014-02-1010-0/+20
| | | | | | | | | | | OPTIONS_DEFINE. This policy has been implemented only recently that's why we have many ports violating this policy. This patch adds the default options specified in the Porter's Handbook to OPTIONS_DEFINE where they are being used. Ports maintained by gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded. Approved by: portmgr (bapt)
* - Stage supportmiwi2014-02-102-22/+36
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* Update WWWehaupt2014-02-091-1/+1
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* Deprecate ports unmaintained for which distillator is not able to find ↵bapt2014-02-081-0/+3
| | | | | | public distfiles Reported by: distilator
* biology/libgenome: Fix build on dragonflymarino2014-02-061-0/+10
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* biology/tRNAscan-SE: Fix hardcoded perl pathmarino2014-02-061-0/+11
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* biology/wise: Add dragonfly supportmarino2014-02-061-0/+13
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* Drop maintainership on those.mat2014-02-061-1/+1
| | | | Sponsored by: Absolight
* Drop maintainership BOINC ports, old machine running them gave up.rene2014-02-051-1/+1
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* - Stage supportmiwi2014-01-312-33/+31
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* - Stage supportmiwi2014-01-311-1/+0
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* - Stage supportmiwi2014-01-311-1/+0
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* - Convert to PYDISTUTILS_AUTOPLISTmiwi2014-01-312-25/+3
| | | | | - Stage support - Bump PORTREV
* - Convert to PYDISTUTILS_AUTOPLISTmiwi2014-01-312-11/+3
| | | | | - Stage support - Bump PORTREV
* Unbreak the fetch: one of the documentation PDF files was rerolled.danfe2014-01-302-4/+2
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* - Mark BROKEN because it does not fetchdecke2014-01-301-0/+2
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* - fix pkg-plistaz2014-01-302-4/+3
| | | | - add LICENSE
* - Stagify; cleanup Makefile and reorder the knobs a bitdanfe2014-01-291-28/+21
| | | | - Drop the case for long unsupported alpha architecture
* - Fix build on -currentmiwi2014-01-266-26/+60
| | | | | | | | | | - Update MASTER_SITES and WWW: line - Support CXX/CXXFLAGS properly - Support PLIST_FILES - Stage support PR: 184852 Submitted by: Ports Fury
* - Update to 1.9sunpoet2014-01-233-8/+7
| | | | | | - Sort PLIST Changes: http://search.cpan.org/dist/Bio-GFF3/Changes
* Fix properties on pkg-plistbapt2014-01-224-4/+0
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* Support stagebapt2014-01-211-5/+4
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* Support stagebapt2014-01-211-6/+5
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* Support stagebapt2014-01-212-3/+1
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* Support stagebapt2014-01-212-13/+26
| | | | Conver USE_GMAKE
* Stage supportantoine2014-01-181-15/+7
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* - Update to version 1.13.0 and improve FreeBSD support; it also buildsdanfe2014-01-179-140/+378
| | | | | | | | | | pretty cleanly with GCC v4.2, v4.6, and Clang (modulo a few warnings) - Sadly, do not use PORTDOCS: since DOCSDIR is set to be inside DATADIR, and will get appended to PLIST after @dirrm %%DATADIR%%, which upsets sanity checking tools; instead, list the docs explicitly in DISTFILES and add them to pkg-plist (guarded by %%PORTDOCS%%) Tested on: i386 (only)
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
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* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
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* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
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* Reduce over inclusion of bsd.port.mkbapt2014-01-161-7/+3
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* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
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* Support stagebapt2014-01-161-19/+10
| | | | | Reduce over inclusions of bsd.port.mk Use BROKEN_${ARCH}
generated by cgit (git 2.34.1) at 2024-11-24 18:54:27 +0800