aboutsummaryrefslogtreecommitdiffstats
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* Convert to USES=dos2unixbapt2013-11-181-6/+5
* biology/seqtools: update to 4.23wg2013-11-152-4/+4
* Add stage supportbapt2013-11-131-18/+8
* Stage supportbapt2013-11-131-11/+6
* biology/seqtools: Tools for visualising sequence alignmentswg2013-11-108-60/+61
* . give maintainership to the submitter;bsam2013-11-071-3/+3
* - Update to 1.8sunpoet2013-11-032-3/+3
* - Install official UGENE documentation (PDF)danfe2013-11-013-3/+21
* - Update to version 1.12.3danfe2013-10-318-79/+325
* Update to version 36.3.6dpawel2013-10-305-93/+114
* Update to libmpc version 1.0.1 which brings the following fixes:gerald2013-10-2612-5/+12
* - Remove manual creation and removal of share/applications, as it's now in th...amdmi32013-10-223-4/+0
* Deprecated some ports broken for more than 6 monthbapt2013-10-181-0/+3
* - Switch to build with lang/ruby19tabthorpe2013-10-111-1/+1
* Update BioCocoa to the latest release.theraven2013-10-093-75/+68
* - Update to 0.5.1wen2013-10-043-4/+4
* - Update to 1.7sunpoet2013-10-043-12/+12
* biology/avida: add <unistd.h>, <typoinfo> for modern compilersmarino2013-10-022-0/+20
* - Remove NO_STAGE as these have been tested to be safebdrewery2013-09-252-2/+0
* Use value of BOINC_CLIENT_HOME in pkg-messagerene2013-09-242-2/+3
* - Add stagedir supportrene2013-09-241-12/+17
* Respect 'make check-sanity' for this port too.rene2013-09-241-2/+1
* Fix NO_STAGE attributionbapt2013-09-231-1/+1
* Add NO_STAGE all over the place in preparation for the staging support (cat: ...bapt2013-09-2094-114/+117
* Mark BROKEN, fails checksumbdrewery2013-09-181-0/+2
* Add an explicit dependency on pkgconfantoine2013-09-081-1/+1
* - Use single space after WWW:sunpoet2013-09-081-1/+1
* - convert to the new perl5 frameworkaz2013-09-074-4/+7
* - Make ports use the libc provided iconv implementation on 10-CURRENTmadpilot2013-09-053-3/+5
* - Add WWWsunpoet2013-08-301-2/+1
* - Disconnect ports removed in r325546bdrewery2013-08-291-1/+0
* Update to latest GNUstep core libraries.theraven2013-08-298-412/+85
* Make sure to respect CC and CXX, this fixes the build on head without gccbapt2013-08-281-2/+2
* Update math/gsl to 1.16 and adjust some dependent portsbf2013-08-271-2/+2
* - Update to 2.3.5wen2013-08-204-442/+9
* biology/tinker: Regenerate distinfo to unbreak fetchmarino2013-08-182-2/+3
* Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.gerald2013-08-181-1/+1
* - Remove MAKE_JOBS_SAFE variableak2013-08-1510-10/+0
* biology/libgenome: Mark jobs unsafemarino2013-08-141-0/+2
* - update libdg to 2.1.0dinoex2013-08-092-5/+5
* - Pet portlint: remove blank line among *_DEPENDSsunpoet2013-08-061-1/+0
* - Convert to new perl frameworkaz2013-08-062-2/+4
* - Convert to new perl frameworkmat2013-08-032-2/+2
* - Convert to new perl frameworkaz2013-08-032-2/+2
* - Convert to new perl frameworkmat2013-08-038-24/+19
* - Update to 1.6jadawin2013-08-012-4/+5
* KDE3 and QT3 expired on 2013-07-01, remove these ports.rene2013-07-276-187/+0
* - Update to 3.0wen2013-07-203-32/+46
* - Update to 0.56wen2013-07-203-3/+13
* - Update to 2.37wen2013-07-203-3/+7
* - Update to 36.3.6wen2013-07-195-23/+30
* - Update to 6.2.06miwi2013-07-154-13/+23
* - Update to 4.4.2miwi2013-07-152-3/+3
* - Update to 7.31.0sunpoet2013-07-121-0/+1
* Convert from USE_MOTIF to USES=motifbapt2013-07-101-6/+2
* Convert from USE_MOTIF to USES=motifbapt2013-07-103-7/+4
* Fix some PORT_OPTIONS conversionsantoine2013-07-011-1/+1
* Convert to USES=imakebapt2013-06-291-10/+4
* Fix some screw ups introduced in r319847.rakuco2013-06-252-4/+4
* Remove stale (since r321246) pkg-plist file.bsam2013-06-201-39/+0
* . introdice optionsNG to the port;bsam2013-06-202-98/+26
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-18/+14
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-42/+17
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-34/+11
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-203-13/+12
* Use optionsNG for DOCS.bsam2013-06-201-2/+2
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-12/+9
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-13/+11
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-201-10/+11
* . add license (GPLv2);bsam2013-06-201-8/+9
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-12/+12
* . remove pkg-plist (along with the previous commit).bsam2013-06-201-17/+0
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-201-4/+14
* . NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES;bsam2013-06-202-20/+8
* . add license (GPLv2);bsam2013-06-201-6/+5
* . pet portlint: add USE_LDCONFIG;bsam2013-06-191-0/+2
* . trim Makefile headers;bsam2013-06-191-6/+2
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-192-5/+8
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-192-11/+8
* Index: Makefilebsam2013-06-191-27/+17
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-193-12/+11
* - Avoid of using SITE_PERLaz2013-06-071-2/+1
* - Update to 3.6.9.5miwi2013-06-043-19/+33
* - Fix build with clangmiwi2013-06-041-0/+10
* - Trim Makefile headerswen2013-06-013-15/+3
* - Update to 6.2.05miwi2013-05-292-5/+4
* - Update to 3.5.1wen2013-05-265-105/+22
* - Update to 6.2.04miwi2013-05-212-3/+3
* Convert USE_NCURSES by USES=ncursesbapt2013-05-061-2/+1
* Fix build by adding an explicit dep on pkgconfbapt2013-05-041-0/+1
* - Update to 1.13.0culot2013-04-306-15/+45
* Workaround the way mopac installs executables.delphij2013-04-302-1/+4
* - Update to 6.2.02miwi2013-04-293-3/+4
* Use bsd.port.options.mk instead of bsd.port.{pre|post}.mkrene2013-04-291-2/+2
* - Convert USE_ICONV=yes to USES=iconvmva2013-04-271-1/+1
* Remove unneeded escapingbdrewery2013-04-271-6/+2
* - Update to 5.0.6miwi2013-04-262-3/+3
* Update MASTERSITES for my server to use httpsgjb2013-04-261-1/+1
* - Convert USE_GETTEXT to USES (part 3)ak2013-04-251-1/+1
* Finish converting the whole ports tree to USES=pkgconfigbapt2013-04-231-1/+1
* For perl@ owned ports:eadler2013-03-293-8/+4
* - Update to 4.4.1miwi2013-03-262-25/+17
* - Mark broken checksum mismatchmiwi2013-03-251-0/+2
* - Update to 6.2.01miwi2013-03-255-168/+164
* - convert USE_CMAKE to USESmakc2013-03-232-4/+2
* Fix build with protobuf-2.5.0vanilla2013-03-212-0/+34
* - adopt optionsNGjgh2013-03-191-19/+28
* 1: Upgrade protobuf to 2.5.0.vanilla2013-03-181-0/+1
* - adoption of optionsNGjgh2013-03-181-15/+12
* - adoption of optionsNGjgh2013-03-182-130/+129
* - adoption of optionsNGjgh2013-03-181-11/+8
* - adoption of optionsNGjgh2013-03-181-26/+26
* - Update to 2012.06.20miwi2013-03-146-191/+173
* Convert USE_BISON to USES= bisonbapt2013-03-081-6/+2
* Remove compatibility with FreeBSD 7.Xrene2013-03-072-14/+2
* Add missing item to pkg-plist reported by QAT but not reported by poudriere.eadler2013-03-031-0/+1
* Update to 2.33eadler2013-03-032-3/+3
* - Update to 2.4.1miwi2013-03-023-124/+45
* Unbreak on 7.X and i386 systems.danfe2013-02-254-1/+37
* Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.danfe2013-02-236-0/+1218
* - Update to 0.52 [1]culot2013-02-163-13/+26
* - remove empty filesrm2013-02-151-0/+0
* - Fix build with clangmiwi2013-02-103-24/+26
* - Update to 1.27jadawin2013-02-052-3/+3
* - Update to 20121109.araujo2013-02-044-43/+25
* - Strip header at request of original creatortabthorpe2013-01-271-5/+1
* - Update to 2.32jadawin2013-01-242-7/+4
* Bump PORTREVISION after DESKTOP_ENTRIES updatemakc2013-01-231-0/+1
* - Update to 9.03.araujo2013-01-145-219/+35
* - Update DESKTOP_ENTRIES:makc2013-01-071-2/+2
* Take over maintainership.rene2012-12-291-1/+1
* Use the new project URL to let the application attach coorectly to therene2012-12-282-18/+15
* Cleanup supporting perl version 5.8 and 5.10,az2012-12-171-7/+1
* - Update to 1.5wen2012-12-162-3/+3
* Update to 5.0.4eadler2012-12-152-3/+3
* - Mark conflict with science/openbabelmakc2012-12-111-6/+4
* science/openbabel:makc2012-12-112-2/+13
* Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIPbapt2012-12-111-8/+1
* Decommissioning java 1.5 (EOLed since October 2009):bapt2012-12-101-6/+2
* Decommissioning java 1.5 (EOLed since October 2009):bapt2012-12-102-2/+2
* - Support CC properlypawel2012-12-083-35/+26
* Update to 2.31.tobez2012-12-073-9/+11
* - Reset MAINTAINER due to unrecoverable email bouncezi2012-12-051-1/+1
* - Fix build with clanggahr2012-12-031-0/+56
* - Update to version 6.1.01sperber2012-12-0115-753/+788
* - Update to version 5.0.2sperber2012-12-017-275/+79
* 2012-11-26 benchmarks/gsbench: No more public distfilesbapt2012-11-284-51/+0
* - Update to version 2.0wen2012-11-156-80/+60
* - Update to version 4.4.0pawel2012-10-315-76/+56
* Update to version 2.12.4pawel2012-10-312-10/+4
* - Reset maintainer to perl@wen2012-10-301-1/+1
* - Update to 1.4wen2012-10-302-8/+4
* - Trim Makefile headerswen2012-10-301-6/+2
* Deprecate a bunch of ports that are either abandonware and/or for which no morebapt2012-10-261-0/+3
* 2012-10-20 chinese/wangttf: No more public distfilesbapt2012-10-266-100/+0
* - Update to 1.26wen2012-10-252-8/+4
* - cleanup commentsdinoex2012-10-131-5/+0
* - Update to 1.5.3wen2012-10-083-11/+37
* - Take maintainershipwen2012-10-017-7/+7
* - Reassign to the heap at maintainer's requesttabthorpe2012-10-0120-131/+40
* Add new ports biology/plink [1] and biology/plinkseq [2]:makc2012-09-279-0/+138
* - update to 1.60rm2012-09-254-133/+140
* Mea culpa, s/Whom/Created by/danfe2012-09-231-1/+1
* - Adjust "Created by" tag to include more complete submitter's informationdanfe2012-09-231-5/+4
* - Reassign to the heap at maintainer's requesttabthorpe2012-09-221-6/+2
* Deprecated a bunch a ports with nor more public distfiles (thanks ehaupt'sbapt2012-09-211-0/+3
* Mark as broken on sparc64: depends on thread-local storage, which is notlinimon2012-09-081-0/+4
* Fix build with clangbapt2012-08-241-0/+13
* - Submitter is now maintainerscheidell2012-08-071-1/+1
* - Update to version 6.903scheidell2012-08-074-44/+119
* Switch from libglut to freeglut and retire libglut. Libglut hasn't beenkwm2012-08-053-3/+4
* Fix typos in COMMENTcs2012-07-291-1/+1
* Fix typos in COMMENTcs2012-07-252-2/+2
* Fix typos in COMMENTcs2012-07-241-1/+1
* Replace USE_GCC=4.4+ by USE_GCC=4.6+ since GCC 4.4 is on its way out.gerald2012-07-221-1/+1
* - Update to 1.23sunpoet2012-07-202-5/+5
* - Remove SITE_PERL from *_DEPENDSaz2012-06-301-2/+2
* - Remove SITE_PERL from *_DEPENDSaz2012-06-301-39/+39
* - reset MAINTAINERdinoex2012-06-262-2/+2
* s/X11BASE/LOCALBASE/, or equivalent.dougb2012-06-251-1/+1
* - Update to 2.29sunpoet2012-06-182-4/+3
* - Update to version 2.1.8sylvio2012-06-186-171/+21
* - Update to version 2.12.3sylvio2012-06-183-30/+54
* - Update to 0.50sunpoet2012-06-133-22/+37
* - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} orswills2012-06-114-4/+4
* - Fix maintainer emailamdmi32012-06-071-1/+1
* SeqAn is an open source C++ library of efficient algorithmsamdmi32012-06-078-0/+2230
* - Remove SITE_PERL from *_DEPENDSaz2012-06-041-1/+1
* - Update to 0.49sunpoet2012-06-032-4/+3
* Set maintainership back to ports@cs2012-06-032-2/+2
* - update png to 1.5.10dinoex2012-06-0115-16/+19
* Remove non-serving mirrorcs2012-05-201-2/+1
* - Adjust BOINC_* variables to be consistent with new system in boinc-clientpav2012-05-162-9/+9
* - Update to 0.48sunpoet2012-05-032-5/+5
* - Update to 1.3culot2012-04-262-3/+3
* - Update to 2.28wen2012-04-173-3/+4
* - Update to 1.2culot2012-04-163-16/+18
* - Update to 0.47wen2012-04-112-3/+3
* - Update to 1.0wen2012-03-223-4/+7
* - Revert ports/165605 as requested by portmgr@pgollucci2012-03-141-1/+7
* - Remove ports that only work with < perl 5.12 (devel/p5-B-Size, devel/p5-Dev...pgollucci2012-03-091-7/+1
* - Update to 1.59wen2012-03-063-1070/+1129
* - Update to 0.46wen2012-03-053-3/+12
* - Update to 0.4.5wen2012-02-232-3/+3
* - Update MASTER_SITES and WWW: linemiwi2012-02-203-20/+28
* update to 1.5.0.1.maho2012-02-164-40/+76
* - Update to 0.78sunpoet2012-02-113-44/+58
* - Update to 2.26sunpoet2012-02-113-5/+7
* - Update to 1.22sunpoet2012-02-092-3/+3
* - Update to 0.77wen2012-02-093-5/+8
* - fix build with gcc46dinoex2012-02-071-7/+4
* - Mark BROKEN on FreeBSD 9.X and up: does not compilepav2012-02-061-1/+7
* - Respect CCmiwi2012-01-281-1/+2
* At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450eadler2012-01-225-5/+5
* - Update to 3.23sylvio2012-01-172-3/+3
* Chase pdflib.so version and bump PORTREVISION accordingly.ale2012-01-101-2/+2
* - The proper acronym for Apache Software License 2 is really AL2tabthorpe2012-01-091-1/+1
* - Update to 0.87wen2011-12-233-4/+6
* - Update to 1.21sunpoet2011-11-242-4/+5
* - unbreakgahr2011-11-172-2/+29
* Does not build on powerpc-9: error in pthreads.linimon2011-11-101-0/+4
* - Remove WITH_FBSD10_FIX, is no longer neededmiwi2011-11-091-1/+0
* - Mark BROKEN: does not compile with new fltkpav2011-11-051-0/+2
* - Fix fetch and update WWWpav2011-11-052-2/+2
* - Fix build on FreeBSD 10miwi2011-10-291-0/+1
* - Update to 0.45sunpoet2011-10-292-3/+3
* The vast majority of pkg-descr files had the following format when theydougb2011-10-243-10/+1
* - remove maintainer tags from pkg-descreadler2011-10-2311-27/+0
* - Update to 0.43sunpoet2011-10-173-3/+7
* - Update to 0.44wen2011-10-132-4/+4
* - ${FFLAGS} might contain commaspav2011-10-111-1/+1
* - Update to 0.7wen2011-10-102-3/+3
* - Fix LICENSE (Artistic 1 instead of Artistic 2)culot2011-10-071-1/+1
* - Update to 2.25sunpoet2011-10-033-22/+23
* - Add build depends to silence build warningsswills2011-09-251-1/+2
* - Fix missing DEPENDS to silence build warningsswills2011-09-251-1/+2
* - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)amdmi32011-09-245-10/+8
* - Update to 0.6wen2011-09-222-3/+3
* Change maintainer address to my FreeBSD addresscs2011-09-152-2/+2
* - Fix MASTER_SITES and WWW: linewen2011-08-262-33/+19
* - Add missing BUILD_DEPENDSswills2011-08-181-1/+2
* Remove USE_GNOME=gnometarget from ports. It has been a empty keyword sincekwm2011-08-122-2/+0
* - Update to 1.5.1wen2011-08-113-12/+41
* - Update to 0.40culot2011-08-102-3/+6
* Remove WWW entries from unmaintained ports that return 404 or where the domainehaupt2011-08-031-2/+0
* Deprecate port with no more public distfilesbapt2011-08-021-0/+3
* Bye bye abandonwares (part 2)bapt2011-08-0130-726/+0
* - Update to 0.39sunpoet2011-08-013-3/+34
* Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,linimon2011-07-212-2/+2
* - Update to 0.38sunpoet2011-07-163-50/+64
generated by cgit (git 2.34.1) at 2024-12-02 08:19:49 +0800