aboutsummaryrefslogtreecommitdiffstats
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* Mark as broken unstaged perl portsbapt2014-04-092-0/+2
* Support stagebapt2014-04-072-32/+16
* - Update to 0.5.2wen2014-04-062-4/+5
* - Update to 2.3.6wen2014-04-062-4/+5
* - Update to 4.8wen2014-04-053-8/+8
* Unbreakantoine2014-03-281-1/+1
* - Fix PLISTsunpoet2014-03-262-0/+3
* - Update to 2.0sunpoet2014-03-262-3/+3
* Does not build with wx 3.0bapt2014-03-241-3/+3
* Add staging supportpawel2014-03-241-12/+5
* - Add staging supportpawel2014-03-241-19/+9
* - Add staging supportpawel2014-03-242-31/+31
* - Add staging supportpawel2014-03-241-17/+13
* Add staging supportpawel2014-03-242-34/+60
* - Add staging supportpawel2014-03-241-10/+8
* Add staging supportpawel2014-03-241-15/+8
* Add staging supportpawel2014-03-241-8/+5
* Deprecate: Broken for more than 6 monthsantoine2014-03-191-0/+2
* Support stagingehaupt2014-03-141-9/+3
* Support stagingehaupt2014-03-141-2/+2
* - Convert USE_GMAKE to USESmiwi2014-03-1310-11/+10
* Deprecate a few old unmaintained portsantoine2014-03-121-0/+2
* Update the default version of GCC used in the Ports Collection fromgerald2014-03-1112-10/+12
* biology/ssaha: undeprecate, this port fetches and builds fine.rene2014-03-091-3/+0
* Deprecate a few unmaintained ports (leaf ports, non staged and unmaintained s...antoine2014-03-092-0/+4
* Unbreakantoine2014-03-091-1/+0
* Convert b* to USES=zipbapt2014-03-075-10/+5
* Convert to dos2unixbapt2014-03-071-1/+1
* Update to version 1.13.1.danfe2014-03-073-4/+4
* biology/fasta3: Checked new distfile and regenerated distinfo to unbreakmarino2014-03-022-3/+8
* - Update to 35miwi2014-02-274-27/+50
* - Update to 5.0.7miwi2014-02-272-24/+21
* - Stage supportmiwi2014-02-272-21/+18
* - Repocopy print/py-reportlab to print/py-reportlab1tota2014-02-251-2/+2
* Remove trailing whitespaces from category biologyehaupt2014-02-2110-10/+10
* Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most casestijl2014-02-173-15/+13
* Support stagingehaupt2014-02-161-2/+1
* Support stagingehaupt2014-02-161-14/+7
* - Support stagingehaupt2014-02-161-9/+7
* Support stagingehaupt2014-02-161-8/+3
* Support stagingehaupt2014-02-161-10/+6
* Fix old makeplist bug.mat2014-02-122-1/+2
* According to the Porter's Handbook (5.12.2.3.) default options must be added toehaupt2014-02-1010-0/+20
* - Stage supportmiwi2014-02-102-22/+36
* Update WWWehaupt2014-02-091-1/+1
* Deprecate ports unmaintained for which distillator is not able to find public...bapt2014-02-081-0/+3
* biology/libgenome: Fix build on dragonflymarino2014-02-061-0/+10
* biology/tRNAscan-SE: Fix hardcoded perl pathmarino2014-02-061-0/+11
* biology/wise: Add dragonfly supportmarino2014-02-061-0/+13
* Drop maintainership on those.mat2014-02-061-1/+1
* Drop maintainership BOINC ports, old machine running them gave up.rene2014-02-051-1/+1
* - Stage supportmiwi2014-01-312-33/+31
* - Stage supportmiwi2014-01-311-1/+0
* - Stage supportmiwi2014-01-311-1/+0
* - Convert to PYDISTUTILS_AUTOPLISTmiwi2014-01-312-25/+3
* - Convert to PYDISTUTILS_AUTOPLISTmiwi2014-01-312-11/+3
* Unbreak the fetch: one of the documentation PDF files was rerolled.danfe2014-01-302-4/+2
* - Mark BROKEN because it does not fetchdecke2014-01-301-0/+2
* - fix pkg-plistaz2014-01-302-4/+3
* - Stagify; cleanup Makefile and reorder the knobs a bitdanfe2014-01-291-28/+21
* - Fix build on -currentmiwi2014-01-266-26/+60
* - Update to 1.9sunpoet2014-01-233-8/+7
* Fix properties on pkg-plistbapt2014-01-224-4/+0
* Support stagebapt2014-01-211-5/+4
* Support stagebapt2014-01-211-6/+5
* Support stagebapt2014-01-212-3/+1
* Support stagebapt2014-01-212-13/+26
* Stage supportantoine2014-01-181-15/+7
* - Update to version 1.13.0 and improve FreeBSD support; it also buildsdanfe2014-01-179-140/+378
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-7/+3
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
* Support stagebapt2014-01-161-19/+10
* Python cleanup:rene2014-01-143-3/+3
* - Fix build with clangriggs2014-01-132-13/+8
* - add stage supportaz2014-01-062-6/+4
* - add stage supportaz2014-01-063-4/+2
* - support stageaz2014-01-056-135/+143
* Mark as broken: Invalid checksum, seems like the software was rerolledbapt2014-01-041-0/+2
* Convert biology to MDOCS and MEXAMPLESadamw2014-01-0314-20/+46
* - rename AL2 to APACHE20 in Mk/bsd.licenses.db.mkohauer2013-12-311-1/+1
* Stage supportantoine2013-12-311-3/+2
* Stage supportantoine2013-12-311-13/+4
* - USES=fortran gmake.tijl2013-12-292-16/+15
* The hmmer binary was renamed upstream to indicate that it is now anrene2013-12-292-6/+6
* biology/seqtools: update to 4.24wg2013-12-252-3/+3
* Several fixes:rene2013-12-242-10/+14
* - Fix build with clang/libc++.wen2013-12-202-3/+12
* - Respect CC/CFLAGSpawel2013-12-202-6/+43
* - biology/tinker: USES=fortran, staging.tijl2013-12-192-22/+20
* USES=fortran, staging.tijl2013-12-191-9/+5
* USES=fortran, staging, miscellaneous cleanups.tijl2013-12-192-119/+26
* Version 2013.12.12, USES=fortran, staging.tijl2013-12-181-30/+17
* USES=fortran, fix LDFLAGS, staging.tijl2013-12-181-11/+10
* Fix the build with more standards-compliant compilers such as GCC 4.7. [1]gerald2013-12-134-1/+63
* In preparation for making libtool generate libraries with a sane name, fix allbapt2013-12-1112-19/+19
* Support stagebapt2013-12-111-8/+5
* Support stagebapt2013-12-111-8/+5
* Support stagebapt2013-12-111-3/+3
* Respect PORT_OPTIONS:MDOCSadamw2013-12-092-8/+8
* - Fix build on headwen2013-12-011-0/+1
* - Update to 1.28jadawin2013-11-283-62/+60
* - Fix build with clangjadawin2013-11-285-34/+44
* - Fix buildjadawin2013-11-272-10/+42
* biology/lamarc: fix build on currentwg2013-11-262-4/+10
* Convert to USES=dos2unixbapt2013-11-181-6/+5
* biology/seqtools: update to 4.23wg2013-11-152-4/+4
* Add stage supportbapt2013-11-131-18/+8
* Stage supportbapt2013-11-131-11/+6
* biology/seqtools: Tools for visualising sequence alignmentswg2013-11-108-60/+61
* . give maintainership to the submitter;bsam2013-11-071-3/+3
* - Update to 1.8sunpoet2013-11-032-3/+3
* - Install official UGENE documentation (PDF)danfe2013-11-013-3/+21
* - Update to version 1.12.3danfe2013-10-318-79/+325
* Update to version 36.3.6dpawel2013-10-305-93/+114
* Update to libmpc version 1.0.1 which brings the following fixes:gerald2013-10-2612-5/+12
* - Remove manual creation and removal of share/applications, as it's now in th...amdmi32013-10-223-4/+0
* Deprecated some ports broken for more than 6 monthbapt2013-10-181-0/+3
* - Switch to build with lang/ruby19tabthorpe2013-10-111-1/+1
* Update BioCocoa to the latest release.theraven2013-10-093-75/+68
* - Update to 0.5.1wen2013-10-043-4/+4
* - Update to 1.7sunpoet2013-10-043-12/+12
* biology/avida: add <unistd.h>, <typoinfo> for modern compilersmarino2013-10-022-0/+20
* - Remove NO_STAGE as these have been tested to be safebdrewery2013-09-252-2/+0
* Use value of BOINC_CLIENT_HOME in pkg-messagerene2013-09-242-2/+3
* - Add stagedir supportrene2013-09-241-12/+17
* Respect 'make check-sanity' for this port too.rene2013-09-241-2/+1
* Fix NO_STAGE attributionbapt2013-09-231-1/+1
* Add NO_STAGE all over the place in preparation for the staging support (cat: ...bapt2013-09-2094-114/+117
* Mark BROKEN, fails checksumbdrewery2013-09-181-0/+2
* Add an explicit dependency on pkgconfantoine2013-09-081-1/+1
* - Use single space after WWW:sunpoet2013-09-081-1/+1
* - convert to the new perl5 frameworkaz2013-09-074-4/+7
* - Make ports use the libc provided iconv implementation on 10-CURRENTmadpilot2013-09-053-3/+5
* - Add WWWsunpoet2013-08-301-2/+1
* - Disconnect ports removed in r325546bdrewery2013-08-291-1/+0
* Update to latest GNUstep core libraries.theraven2013-08-298-412/+85
* Make sure to respect CC and CXX, this fixes the build on head without gccbapt2013-08-281-2/+2
* Update math/gsl to 1.16 and adjust some dependent portsbf2013-08-271-2/+2
* - Update to 2.3.5wen2013-08-204-442/+9
* biology/tinker: Regenerate distinfo to unbreak fetchmarino2013-08-182-2/+3
* Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.gerald2013-08-181-1/+1
* - Remove MAKE_JOBS_SAFE variableak2013-08-1510-10/+0
* biology/libgenome: Mark jobs unsafemarino2013-08-141-0/+2
* - update libdg to 2.1.0dinoex2013-08-092-5/+5
* - Pet portlint: remove blank line among *_DEPENDSsunpoet2013-08-061-1/+0
* - Convert to new perl frameworkaz2013-08-062-2/+4
* - Convert to new perl frameworkmat2013-08-032-2/+2
* - Convert to new perl frameworkaz2013-08-032-2/+2
* - Convert to new perl frameworkmat2013-08-038-24/+19
* - Update to 1.6jadawin2013-08-012-4/+5
* KDE3 and QT3 expired on 2013-07-01, remove these ports.rene2013-07-276-187/+0
* - Update to 3.0wen2013-07-203-32/+46
* - Update to 0.56wen2013-07-203-3/+13
* - Update to 2.37wen2013-07-203-3/+7
* - Update to 36.3.6wen2013-07-195-23/+30
* - Update to 6.2.06miwi2013-07-154-13/+23
* - Update to 4.4.2miwi2013-07-152-3/+3
* - Update to 7.31.0sunpoet2013-07-121-0/+1
* Convert from USE_MOTIF to USES=motifbapt2013-07-101-6/+2
* Convert from USE_MOTIF to USES=motifbapt2013-07-103-7/+4
* Fix some PORT_OPTIONS conversionsantoine2013-07-011-1/+1
* Convert to USES=imakebapt2013-06-291-10/+4
* Fix some screw ups introduced in r319847.rakuco2013-06-252-4/+4
* Remove stale (since r321246) pkg-plist file.bsam2013-06-201-39/+0
* . introdice optionsNG to the port;bsam2013-06-202-98/+26
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-18/+14
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-42/+17
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-34/+11
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-203-13/+12
* Use optionsNG for DOCS.bsam2013-06-201-2/+2
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-12/+9
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-13/+11
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-201-10/+11
* . add license (GPLv2);bsam2013-06-201-8/+9
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-12/+12
* . remove pkg-plist (along with the previous commit).bsam2013-06-201-17/+0
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-201-4/+14
* . NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES;bsam2013-06-202-20/+8
* . add license (GPLv2);bsam2013-06-201-6/+5
* . pet portlint: add USE_LDCONFIG;bsam2013-06-191-0/+2
* . trim Makefile headers;bsam2013-06-191-6/+2
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-192-5/+8
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-192-11/+8
* Index: Makefilebsam2013-06-191-27/+17
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-193-12/+11
* - Avoid of using SITE_PERLaz2013-06-071-2/+1
* - Update to 3.6.9.5miwi2013-06-043-19/+33
* - Fix build with clangmiwi2013-06-041-0/+10
* - Trim Makefile headerswen2013-06-013-15/+3
* - Update to 6.2.05miwi2013-05-292-5/+4
* - Update to 3.5.1wen2013-05-265-105/+22
* - Update to 6.2.04miwi2013-05-212-3/+3
* Convert USE_NCURSES by USES=ncursesbapt2013-05-061-2/+1
* Fix build by adding an explicit dep on pkgconfbapt2013-05-041-0/+1
* - Update to 1.13.0culot2013-04-306-15/+45
* Workaround the way mopac installs executables.delphij2013-04-302-1/+4
* - Update to 6.2.02miwi2013-04-293-3/+4
* Use bsd.port.options.mk instead of bsd.port.{pre|post}.mkrene2013-04-291-2/+2
* - Convert USE_ICONV=yes to USES=iconvmva2013-04-271-1/+1
* Remove unneeded escapingbdrewery2013-04-271-6/+2
* - Update to 5.0.6miwi2013-04-262-3/+3
* Update MASTERSITES for my server to use httpsgjb2013-04-261-1/+1
* - Convert USE_GETTEXT to USES (part 3)ak2013-04-251-1/+1
* Finish converting the whole ports tree to USES=pkgconfigbapt2013-04-231-1/+1
* For perl@ owned ports:eadler2013-03-293-8/+4
* - Update to 4.4.1miwi2013-03-262-25/+17
* - Mark broken checksum mismatchmiwi2013-03-251-0/+2
* - Update to 6.2.01miwi2013-03-255-168/+164
* - convert USE_CMAKE to USESmakc2013-03-232-4/+2
* Fix build with protobuf-2.5.0vanilla2013-03-212-0/+34
* - adopt optionsNGjgh2013-03-191-19/+28
* 1: Upgrade protobuf to 2.5.0.vanilla2013-03-181-0/+1
* - adoption of optionsNGjgh2013-03-181-15/+12
* - adoption of optionsNGjgh2013-03-182-130/+129
* - adoption of optionsNGjgh2013-03-181-11/+8
* - adoption of optionsNGjgh2013-03-181-26/+26
* - Update to 2012.06.20miwi2013-03-146-191/+173
* Convert USE_BISON to USES= bisonbapt2013-03-081-6/+2
* Remove compatibility with FreeBSD 7.Xrene2013-03-072-14/+2
* Add missing item to pkg-plist reported by QAT but not reported by poudriere.eadler2013-03-031-0/+1
* Update to 2.33eadler2013-03-032-3/+3
* - Update to 2.4.1miwi2013-03-023-124/+45
* Unbreak on 7.X and i386 systems.danfe2013-02-254-1/+37
* Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.danfe2013-02-236-0/+1218
* - Update to 0.52 [1]culot2013-02-163-13/+26
* - remove empty filesrm2013-02-151-0/+0
* - Fix build with clangmiwi2013-02-103-24/+26
* - Update to 1.27jadawin2013-02-052-3/+3
* - Update to 20121109.araujo2013-02-044-43/+25
* - Strip header at request of original creatortabthorpe2013-01-271-5/+1
* - Update to 2.32jadawin2013-01-242-7/+4
* Bump PORTREVISION after DESKTOP_ENTRIES updatemakc2013-01-231-0/+1
* - Update to 9.03.araujo2013-01-145-219/+35
* - Update DESKTOP_ENTRIES:makc2013-01-071-2/+2
* Take over maintainership.rene2012-12-291-1/+1
* Use the new project URL to let the application attach coorectly to therene2012-12-282-18/+15
* Cleanup supporting perl version 5.8 and 5.10,az2012-12-171-7/+1
* - Update to 1.5wen2012-12-162-3/+3
* Update to 5.0.4eadler2012-12-152-3/+3
* - Mark conflict with science/openbabelmakc2012-12-111-6/+4
* science/openbabel:makc2012-12-112-2/+13
* Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIPbapt2012-12-111-8/+1
* Decommissioning java 1.5 (EOLed since October 2009):bapt2012-12-101-6/+2
* Decommissioning java 1.5 (EOLed since October 2009):bapt2012-12-102-2/+2
* - Support CC properlypawel2012-12-083-35/+26
* Update to 2.31.tobez2012-12-073-9/+11
* - Reset MAINTAINER due to unrecoverable email bouncezi2012-12-051-1/+1
generated by cgit (git 2.34.1) at 2024-11-16 18:27:29 +0800