aboutsummaryrefslogtreecommitdiffstats
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* - Chase database/sqlite3 slib bumpmiwi2014-06-281-0/+1
* Fix compilation on 10+ (clang)miwi2014-06-272-2/+10
* - Mark BROKENwen2014-06-261-0/+2
* Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mkantoine2014-06-251-1/+2
* Use MAKE_CMD instead of GMAKEbapt2014-06-251-2/+2
* Mark as broken: no distinfo providedbapt2014-06-231-2/+1
* Mark as broken: no distinfo providedbapt2014-06-231-3/+1
* Fix shebang line in Perl and Python scripts.rakuco2014-06-201-13/+6
* Mark BROKEN: Fails to configureantoine2014-06-201-0/+2
* biology/blast: Deprecate for removal after 4 September 2014marino2014-06-191-0/+3
* Update to 1.2.10.rakuco2014-06-183-35/+23
* Update to 3.8.31.rakuco2014-06-185-89/+37
* Reset the 99 ports still listed under sylvio@marino2014-06-121-1/+1
* Remove all the bootstrap files (.bs) from the plists.mat2014-06-102-3/+0
* Remove indefinite articles and trailing periods from COMMENT, plusolgeni2014-06-096-6/+6
* Remove all space characters from Makefile assignments.olgeni2014-06-091-1/+1
* Stagify, remove BROKEN.vanilla2014-06-072-112/+107
* - Update to 6.6.0miwi2014-06-055-834/+1183
* Unbreakantoine2014-06-051-1/+1
* - Update to 4.5.2miwi2014-06-042-5/+5
* Update to 0.5.1 snapshot 20100824bapt2014-06-034-8/+49
* - add stage supportohauer2014-06-011-5/+1
* - add stage supportohauer2014-06-011-12/+6
* - add stage supportohauer2014-06-011-22/+16
* - add stage supportohauer2014-06-011-6/+3
* - add stage supportohauer2014-06-011-16/+4
* - add stage supportohauer2014-06-011-21/+8
* - I forgot to svn add a new patchdanilo2014-06-011-0/+10
* - Update from 1.13.5 to 1.13.7danilo2014-06-013-9/+9
* Add DOCS and EXAMPLE options to biology/mafftmilki2014-05-311-0/+2
* - Update to 1.6.923wen2014-05-305-1532/+1440
* biology/embassy: specify post-extraction with ${TAR}marino2014-05-291-1/+1
* Convert to USES=dos2unixbapt2014-05-261-2/+2
* Multiple ports: reset maintainerseadler2014-05-262-2/+2
* - Update to 4.5.1miwi2014-05-213-8/+13
* - Update to 7.149amdmi32014-05-213-32/+35
* Quote ${CC} and similar variables in MAKE_ARGS.tijl2014-05-211-1/+1
* - update to 1.31jadawin2014-05-162-3/+3
* - Update to 5.10.0wen2014-05-133-6/+39
* - Update to 5.9.0 [1]wen2014-05-133-40/+263
* Replace maintainer's email address with one that seems to workantoine2014-05-114-4/+4
* Catch a couple of missing convertsion to :tu/:tlbapt2014-05-051-1/+1
* Support stagebapt2014-05-051-20/+9
* Convert all :U to :tu and :L to :tlbapt2014-05-051-3/+3
* biology/seqtools: 4.25 -> 4.26, fix broken distinfo by upgradingpi2014-05-032-4/+5
* - Stage support [1]wen2014-05-023-1064/+5
* biology/seqtools: 4.24 -> 4.25pi2014-05-022-5/+4
* - Stageswills2014-04-272-1138/+2
* - Update to version 1.13.5miwi2014-04-264-43/+52
* - Un-break fetch stage: the name scheme of the source tarballs has changedriggs2014-04-235-12/+34
* Remove expired ports:rene2014-04-1812-635/+0
* The FreeBSD x11@ and graphics team proudly presentszeising2014-04-174-3/+4
* Remove expired ports:rene2014-04-1313-304/+0
* - Back to the heap, I don't use this port anymoreculot2014-04-121-1/+1
* Mark as broken unstaged perl portsbapt2014-04-092-0/+2
* Support stagebapt2014-04-072-32/+16
* - Update to 0.5.2wen2014-04-062-4/+5
* - Update to 2.3.6wen2014-04-062-4/+5
* - Update to 4.8wen2014-04-053-8/+8
* Unbreakantoine2014-03-281-1/+1
* - Fix PLISTsunpoet2014-03-262-0/+3
* - Update to 2.0sunpoet2014-03-262-3/+3
* Does not build with wx 3.0bapt2014-03-241-3/+3
* Add staging supportpawel2014-03-241-12/+5
* - Add staging supportpawel2014-03-241-19/+9
* - Add staging supportpawel2014-03-242-31/+31
* - Add staging supportpawel2014-03-241-17/+13
* Add staging supportpawel2014-03-242-34/+60
* - Add staging supportpawel2014-03-241-10/+8
* Add staging supportpawel2014-03-241-15/+8
* Add staging supportpawel2014-03-241-8/+5
* Deprecate: Broken for more than 6 monthsantoine2014-03-191-0/+2
* Support stagingehaupt2014-03-141-9/+3
* Support stagingehaupt2014-03-141-2/+2
* - Convert USE_GMAKE to USESmiwi2014-03-1310-11/+10
* Deprecate a few old unmaintained portsantoine2014-03-121-0/+2
* Update the default version of GCC used in the Ports Collection fromgerald2014-03-1112-10/+12
* biology/ssaha: undeprecate, this port fetches and builds fine.rene2014-03-091-3/+0
* Deprecate a few unmaintained ports (leaf ports, non staged and unmaintained s...antoine2014-03-092-0/+4
* Unbreakantoine2014-03-091-1/+0
* Convert b* to USES=zipbapt2014-03-075-10/+5
* Convert to dos2unixbapt2014-03-071-1/+1
* Update to version 1.13.1.danfe2014-03-073-4/+4
* biology/fasta3: Checked new distfile and regenerated distinfo to unbreakmarino2014-03-022-3/+8
* - Update to 35miwi2014-02-274-27/+50
* - Update to 5.0.7miwi2014-02-272-24/+21
* - Stage supportmiwi2014-02-272-21/+18
* - Repocopy print/py-reportlab to print/py-reportlab1tota2014-02-251-2/+2
* Remove trailing whitespaces from category biologyehaupt2014-02-2110-10/+10
* Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most casestijl2014-02-173-15/+13
* Support stagingehaupt2014-02-161-2/+1
* Support stagingehaupt2014-02-161-14/+7
* - Support stagingehaupt2014-02-161-9/+7
* Support stagingehaupt2014-02-161-8/+3
* Support stagingehaupt2014-02-161-10/+6
* Fix old makeplist bug.mat2014-02-122-1/+2
* According to the Porter's Handbook (5.12.2.3.) default options must be added toehaupt2014-02-1010-0/+20
* - Stage supportmiwi2014-02-102-22/+36
* Update WWWehaupt2014-02-091-1/+1
* Deprecate ports unmaintained for which distillator is not able to find public...bapt2014-02-081-0/+3
* biology/libgenome: Fix build on dragonflymarino2014-02-061-0/+10
* biology/tRNAscan-SE: Fix hardcoded perl pathmarino2014-02-061-0/+11
* biology/wise: Add dragonfly supportmarino2014-02-061-0/+13
* Drop maintainership on those.mat2014-02-061-1/+1
* Drop maintainership BOINC ports, old machine running them gave up.rene2014-02-051-1/+1
* - Stage supportmiwi2014-01-312-33/+31
* - Stage supportmiwi2014-01-311-1/+0
* - Stage supportmiwi2014-01-311-1/+0
* - Convert to PYDISTUTILS_AUTOPLISTmiwi2014-01-312-25/+3
* - Convert to PYDISTUTILS_AUTOPLISTmiwi2014-01-312-11/+3
* Unbreak the fetch: one of the documentation PDF files was rerolled.danfe2014-01-302-4/+2
* - Mark BROKEN because it does not fetchdecke2014-01-301-0/+2
* - fix pkg-plistaz2014-01-302-4/+3
* - Stagify; cleanup Makefile and reorder the knobs a bitdanfe2014-01-291-28/+21
* - Fix build on -currentmiwi2014-01-266-26/+60
* - Update to 1.9sunpoet2014-01-233-8/+7
* Fix properties on pkg-plistbapt2014-01-224-4/+0
* Support stagebapt2014-01-211-5/+4
* Support stagebapt2014-01-211-6/+5
* Support stagebapt2014-01-212-3/+1
* Support stagebapt2014-01-212-13/+26
* Stage supportantoine2014-01-181-15/+7
* - Update to version 1.13.0 and improve FreeBSD support; it also buildsdanfe2014-01-179-140/+378
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-7/+3
* Reduce over inclusion of bsd.port.mkbapt2014-01-161-2/+1
* Support stagebapt2014-01-161-19/+10
* Python cleanup:rene2014-01-143-3/+3
* - Fix build with clangriggs2014-01-132-13/+8
* - add stage supportaz2014-01-062-6/+4
* - add stage supportaz2014-01-063-4/+2
* - support stageaz2014-01-056-135/+143
* Mark as broken: Invalid checksum, seems like the software was rerolledbapt2014-01-041-0/+2
* Convert biology to MDOCS and MEXAMPLESadamw2014-01-0314-20/+46
* - rename AL2 to APACHE20 in Mk/bsd.licenses.db.mkohauer2013-12-311-1/+1
* Stage supportantoine2013-12-311-3/+2
* Stage supportantoine2013-12-311-13/+4
* - USES=fortran gmake.tijl2013-12-292-16/+15
* The hmmer binary was renamed upstream to indicate that it is now anrene2013-12-292-6/+6
* biology/seqtools: update to 4.24wg2013-12-252-3/+3
* Several fixes:rene2013-12-242-10/+14
* - Fix build with clang/libc++.wen2013-12-202-3/+12
* - Respect CC/CFLAGSpawel2013-12-202-6/+43
* - biology/tinker: USES=fortran, staging.tijl2013-12-192-22/+20
* USES=fortran, staging.tijl2013-12-191-9/+5
* USES=fortran, staging, miscellaneous cleanups.tijl2013-12-192-119/+26
* Version 2013.12.12, USES=fortran, staging.tijl2013-12-181-30/+17
* USES=fortran, fix LDFLAGS, staging.tijl2013-12-181-11/+10
* Fix the build with more standards-compliant compilers such as GCC 4.7. [1]gerald2013-12-134-1/+63
* In preparation for making libtool generate libraries with a sane name, fix allbapt2013-12-1112-19/+19
* Support stagebapt2013-12-111-8/+5
* Support stagebapt2013-12-111-8/+5
* Support stagebapt2013-12-111-3/+3
* Respect PORT_OPTIONS:MDOCSadamw2013-12-092-8/+8
* - Fix build on headwen2013-12-011-0/+1
* - Update to 1.28jadawin2013-11-283-62/+60
* - Fix build with clangjadawin2013-11-285-34/+44
* - Fix buildjadawin2013-11-272-10/+42
* biology/lamarc: fix build on currentwg2013-11-262-4/+10
* Convert to USES=dos2unixbapt2013-11-181-6/+5
* biology/seqtools: update to 4.23wg2013-11-152-4/+4
* Add stage supportbapt2013-11-131-18/+8
* Stage supportbapt2013-11-131-11/+6
* biology/seqtools: Tools for visualising sequence alignmentswg2013-11-108-60/+61
* . give maintainership to the submitter;bsam2013-11-071-3/+3
* - Update to 1.8sunpoet2013-11-032-3/+3
* - Install official UGENE documentation (PDF)danfe2013-11-013-3/+21
* - Update to version 1.12.3danfe2013-10-318-79/+325
* Update to version 36.3.6dpawel2013-10-305-93/+114
* Update to libmpc version 1.0.1 which brings the following fixes:gerald2013-10-2612-5/+12
* - Remove manual creation and removal of share/applications, as it's now in th...amdmi32013-10-223-4/+0
* Deprecated some ports broken for more than 6 monthbapt2013-10-181-0/+3
* - Switch to build with lang/ruby19tabthorpe2013-10-111-1/+1
* Update BioCocoa to the latest release.theraven2013-10-093-75/+68
* - Update to 0.5.1wen2013-10-043-4/+4
* - Update to 1.7sunpoet2013-10-043-12/+12
* biology/avida: add <unistd.h>, <typoinfo> for modern compilersmarino2013-10-022-0/+20
* - Remove NO_STAGE as these have been tested to be safebdrewery2013-09-252-2/+0
* Use value of BOINC_CLIENT_HOME in pkg-messagerene2013-09-242-2/+3
* - Add stagedir supportrene2013-09-241-12/+17
* Respect 'make check-sanity' for this port too.rene2013-09-241-2/+1
* Fix NO_STAGE attributionbapt2013-09-231-1/+1
* Add NO_STAGE all over the place in preparation for the staging support (cat: ...bapt2013-09-2094-114/+117
* Mark BROKEN, fails checksumbdrewery2013-09-181-0/+2
* Add an explicit dependency on pkgconfantoine2013-09-081-1/+1
* - Use single space after WWW:sunpoet2013-09-081-1/+1
* - convert to the new perl5 frameworkaz2013-09-074-4/+7
* - Make ports use the libc provided iconv implementation on 10-CURRENTmadpilot2013-09-053-3/+5
* - Add WWWsunpoet2013-08-301-2/+1
* - Disconnect ports removed in r325546bdrewery2013-08-291-1/+0
* Update to latest GNUstep core libraries.theraven2013-08-298-412/+85
* Make sure to respect CC and CXX, this fixes the build on head without gccbapt2013-08-281-2/+2
* Update math/gsl to 1.16 and adjust some dependent portsbf2013-08-271-2/+2
* - Update to 2.3.5wen2013-08-204-442/+9
* biology/tinker: Regenerate distinfo to unbreak fetchmarino2013-08-182-2/+3
* Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.gerald2013-08-181-1/+1
* - Remove MAKE_JOBS_SAFE variableak2013-08-1510-10/+0
* biology/libgenome: Mark jobs unsafemarino2013-08-141-0/+2
* - update libdg to 2.1.0dinoex2013-08-092-5/+5
* - Pet portlint: remove blank line among *_DEPENDSsunpoet2013-08-061-1/+0
* - Convert to new perl frameworkaz2013-08-062-2/+4
* - Convert to new perl frameworkmat2013-08-032-2/+2
* - Convert to new perl frameworkaz2013-08-032-2/+2
* - Convert to new perl frameworkmat2013-08-038-24/+19
* - Update to 1.6jadawin2013-08-012-4/+5
* KDE3 and QT3 expired on 2013-07-01, remove these ports.rene2013-07-276-187/+0
* - Update to 3.0wen2013-07-203-32/+46
* - Update to 0.56wen2013-07-203-3/+13
* - Update to 2.37wen2013-07-203-3/+7
* - Update to 36.3.6wen2013-07-195-23/+30
* - Update to 6.2.06miwi2013-07-154-13/+23
* - Update to 4.4.2miwi2013-07-152-3/+3
* - Update to 7.31.0sunpoet2013-07-121-0/+1
* Convert from USE_MOTIF to USES=motifbapt2013-07-101-6/+2
* Convert from USE_MOTIF to USES=motifbapt2013-07-103-7/+4
* Fix some PORT_OPTIONS conversionsantoine2013-07-011-1/+1
* Convert to USES=imakebapt2013-06-291-10/+4
* Fix some screw ups introduced in r319847.rakuco2013-06-252-4/+4
* Remove stale (since r321246) pkg-plist file.bsam2013-06-201-39/+0
* . introdice optionsNG to the port;bsam2013-06-202-98/+26
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-18/+14
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-42/+17
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-34/+11
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-203-13/+12
* Use optionsNG for DOCS.bsam2013-06-201-2/+2
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-12/+9
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-13/+11
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-201-10/+11
* . add license (GPLv2);bsam2013-06-201-8/+9
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-202-12/+12
* . remove pkg-plist (along with the previous commit).bsam2013-06-201-17/+0
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-201-4/+14
* . NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES;bsam2013-06-202-20/+8
* . add license (GPLv2);bsam2013-06-201-6/+5
* . pet portlint: add USE_LDCONFIG;bsam2013-06-191-0/+2
* . trim Makefile headers;bsam2013-06-191-6/+2
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-192-5/+8
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-192-11/+8
* Index: Makefilebsam2013-06-191-27/+17
* . NOPORTDOCS -> PORT_OPTIONS:MDOCS;bsam2013-06-193-12/+11
* - Avoid of using SITE_PERLaz2013-06-071-2/+1
* - Update to 3.6.9.5miwi2013-06-043-19/+33
* - Fix build with clangmiwi2013-06-041-0/+10
* - Trim Makefile headerswen2013-06-013-15/+3
* - Update to 6.2.05miwi2013-05-292-5/+4
* - Update to 3.5.1wen2013-05-265-105/+22
* - Update to 6.2.04miwi2013-05-212-3/+3
* Convert USE_NCURSES by USES=ncursesbapt2013-05-061-2/+1
generated by cgit (git 2.34.1) at 2024-11-08 17:03:59 +0800