aboutsummaryrefslogtreecommitdiffstats
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* Update to 1.0r2.maho2008-03-076-955/+636
* - File was rerolled for a small bugfix.miwi2008-02-273-3/+16
* - Restore clustalw symlink, other ports rely on itpav2008-02-271-1/+5
* - Update to 2.4.3miwi2008-02-262-4/+4
* - Update to 2.0.3pav2008-02-266-61/+8
* Umark BROKEN, stale distfile removed from ftp-master.erwin2008-01-271-2/+0
* - Update to 2.4.2 (fix fetch problems)miwi2008-01-262-4/+4
* Mark BROKEN: does not fetcherwin2008-01-261-0/+2
* - Update to 2.4.1miwi2008-01-214-15/+46
* Fix build on !i386arved2008-01-041-9/+5
* - Update to 2.0pav2007-12-1615-406/+60
* MrBayes is a program for the Bayesian estimation of phylogeny.miwi2007-12-155-0/+60
* MUMmer is a modular system for the rapid whole genome alignment of finishedmiwi2007-12-155-0/+79
* - Mark BROKEN outside i386: does not compilepav2007-12-051-0/+4
* - Allow build with AMD64miwi2007-10-292-2/+5
* - Update to 1.1.0clsung2007-10-243-74/+86
* - Update to 2.1.2bmiwi2007-10-245-37/+20
* Migration from bison 1.x to 2.xade2007-10-171-1/+2
* - Update to 2.1miwi2007-10-087-18/+196
* - Sort category Makefilessat2007-10-061-2/+2
* - Fix typo in WWWpav2007-10-041-1/+1
* Remove always-false/true conditions based on OSVERSION 500000edwin2007-10-041-1/+1
* Mark as broken on gcc4.2.linimon2007-10-021-1/+7
* Mark as broken with gcc4.2.linimon2007-10-021-0/+4
* biology/linux-foldingathome needs to run as root?edwin2007-09-233-6/+8
* Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+.linimon2007-09-087-39/+5
* - Update to 1.06miwi2007-09-072-12/+5
* - Update to version 2.3itetcu2007-09-034-46/+57
* - Chase x11-toolkits/pmw renamed to x11-toolkits/py-Pmwrafan2007-09-021-2/+2
* Replace IGNORE with ONLY_FOR_ARCHS for this binary port.kris2007-08-091-9/+2
* Fix pkg-plistlme2007-08-031-0/+1
* Update to 2.0.10lme2007-08-014-22/+22
* - cleanup after gnustep-make-2.0.1dinoex2007-07-231-1/+0
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.maho2007-07-141-7/+2
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.maho2007-07-121-4/+2
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.maho2007-07-122-9/+2
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.maho2007-07-121-5/+1
* - Runs on 7.0-CURRENT with compat6xpav2007-07-081-0/+4
* - Update to version 9rafan2007-07-083-1313/+1505
* dyeske at yahoo dot com -> dyeske at gmail dot comedwin2007-07-064-6/+6
* chase math/gsl lib versionijliao2007-06-291-2/+2
* Bump to v0.16.aaron2007-06-203-6/+53
* - Fix the build with GCC 4.2danfe2007-06-192-7/+32
* - Fix typos.miwi2007-05-311-3/+3
* - Update to 1.43miwi2007-05-304-92/+167
* BROKEN: Unfetchablekris2007-05-271-0/+2
* BROKEN with gcc 4.2kris2007-05-271-1/+7
* - update for gnustep-make-2.0.0dinoex2007-05-252-71/+79
* - update for gnustep-make-2.0.0dinoex2007-05-251-1/+1
* swap MASTER_SITES to improve fetchiness on pointyhat which is blocked from da...edwin2007-05-251-4/+2
* BROKEN: Unfetchablekris2007-05-251-0/+2
* - Chase openbabel updatepav2007-05-251-2/+2
* - Welcome X.org 7.2 \o/.flz2007-05-2035-20/+40
* [patch] cleanup non-supported FreeBSD versionsedwin2007-05-021-7/+2
* [patch] cleanup non-supported FreeBSD versionsedwin2007-05-021-7/+1
* [patch] cleanup non-supported FreeBSD versionsedwin2007-05-021-6/+2
* [patch] cleanup non-supported FreeBSD versionsedwin2007-05-021-7/+1
* Use my @FreeBSD.org address.nemoliu2007-04-301-1/+1
* - Update to 4.5clsung2007-04-243-14/+13
* - Unbreakmiwi2007-04-211-3/+3
* BROKEN: Unfetchablekris2007-04-201-0/+2
* [patch] cleanup non-supported FreeBSD versionsedwin2007-04-173-41/+1
* Remove always-true condition due to OSVERSIONedwin2007-04-161-1/+1
* - Remove unreachable OSVERSION code.edwin2007-04-161-13/+9
* - Fix after objformat removalpav2007-03-291-0/+3
* - Update to 1.5-beta2miwi2007-03-273-13/+14
* - MASTER_SITE is back, remove BROKENgabor2007-03-171-2/+0
* Reset razi@genet.sickkids.on.ca due to maintainer-timeouts and no response tolinimon2007-03-141-1/+1
* Reset dbader@eece.unm.edu due to maintainer-timeouts.linimon2007-03-111-1/+1
* Reset dbader@eece.unm.edu due to maintainer-timeout. While here, fix fetch.linimon2007-03-111-2/+2
* Reset chuynh@biolateral.com.au: address bounces.linimon2007-03-112-2/+2
* - Update to 4.96miwi2007-03-093-10/+143
* - Update to 34.26.2miwi2007-03-092-8/+6
* - Release distfile was renamed.miwi2007-03-082-5/+5
* BROKEN: Unfetchablekris2007-02-271-0/+2
* - mark ignore on FreeBSD 5.xdinoex2007-02-191-1/+7
* Schedule these broken ports for removal on 2007-04-10 if they are stillkris2007-02-111-0/+2
* Update to 0.99rc6.maho2007-02-092-5/+5
* BROKEN: Does not buildkris2007-02-051-0/+2
* Use libtool port instead of included version to avoid objformat a.out botchkris2007-02-011-0/+1
* - add category gnustepdinoex2007-02-012-2/+2
* Build fix.maho2007-01-291-1/+2
* Update to 3.66itetcu2007-01-282-4/+4
* Fix master sites, un-deprecate and update biology/recombine to 1.41.vd2007-01-254-86/+19
* Remove expired leaf port:vd2007-01-256-78/+0
* Get rid of biology/coalesce dependency, it is deprecated and will be removedvd2007-01-251-2/+2
* Fix master site and un-deprecatevd2007-01-251-4/+1
* - Fix typomiwi2007-01-231-1/+1
* - Project moves to a new home. Change MASTER_SITES and WWWrafan2007-01-232-2/+2
* Fix build.maho2007-01-191-1/+1
* Forgot to commit a patch. Fixes build.maho2007-01-191-0/+20
* * Migrate to gfortran.maho2007-01-172-13/+11
* . change dependencies: shells/bash2 -> shells/bash;bsam2007-01-171-1/+2
* * Migrate to gfortran.maho2007-01-161-5/+4
* - update to use new bsd.gnustep.mkdinoex2007-01-131-4/+3
* * Migrate to gfortran.maho2007-01-122-2/+7
* Using gfortran42 only. not using gcc42.maho2007-01-121-3/+5
* Using only gfortran42. not gcc42.maho2007-01-122-6/+10
* * Add dummy knob WANT_FORTRAN for future gfortranmaho2007-01-092-127/+147
* migrated to gfortran.maho2007-01-091-0/+3
* Migrated to gfortran.maho2007-01-093-6/+13
* The BioCocoa framework provides developers with the opportunity to adddinoex2006-12-305-0/+45
* - Update to 1.0.1miwi2006-12-303-97/+98
* Update to v0.15aaron2006-12-283-40/+40
* Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no responselinimon2006-12-265-5/+5
* - Update to 5.1.2miwi2006-12-2411-236/+308
* - Update to 1.03rafan2006-12-193-105/+42
* Reset dbader@ece.unm.edu due to timeouts and no response to email.linimon2006-12-132-2/+2
* Reset whitekid@gmail.com after timeouts and no response to email.linimon2006-12-131-1/+1
* - Update to 2.1.3gabor2006-12-104-33/+19
* - Deprecategabor2006-12-103-0/+9
* - Local/Tools/Resources now globaldinoex2006-12-091-1/+0
* - Respect X11BASErafan2006-12-091-0/+5
* - Update to 0.14laszlof2006-12-074-56/+48
* - Mark broken on amd64 < 6. We got followingrafan2006-12-041-0/+4
* Correct path to Compress::Zlib.pm after recent p5-Compress-Zlib update.demon2006-12-031-1/+1
* - Respect X11BASErafan2006-12-031-1/+1
* - Use features of bsd.wx.mk, especially USE_WXpav2006-12-011-4/+2
* - Respect X11BASEmiwi2006-11-281-2/+2
* - Update to 1.91rafan2006-11-273-38/+5
* - Upgrade to the latest beta and unbreak;thierry2006-11-224-230/+274
* - cleanup patchesdinoex2006-11-131-3/+0
* - fix build on non i386 archsdinoex2006-11-101-2/+2
* Adun is a new extendible molecular simulation program that alsodinoex2006-11-1010-0/+607
* - Update to 1.42miwi2006-10-313-121/+90
* - Update to 34.t26.b3miwi2006-10-313-4/+7
* Distfile now checksums successfully.lawrance2006-10-151-4/+0
* Chase the GNOME X11BASE to LOCALBASE move, and fix the build with themarcus2006-10-142-5/+7
* - Add hmmer 5.09 applicationpav2006-10-104-10/+38
* Chase pdf library and bump PORTREVISION.ale2006-10-091-1/+2
* - Allow wxWidgets 2.6 alongside 2.4, this port works with bothpav2006-10-091-4/+3
* - Update to 0.98dclsung2006-10-062-4/+4
* Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNAclsung2006-09-298-0/+105
* Unbreak: molden has been updated on Aug 17, with the same DISTNAME.thierry2006-09-174-23/+35
* Fix build on amd64maho2006-09-172-4/+4
* BROKEN on amd64 and ia64: Does not buildkris2006-09-171-0/+4
* BROKEN: Size mismatch. Since this is unmaintained, deprecate and schedulekris2006-09-041-0/+4
* NO_CDROM and NO_PACKAGE are not appropriate herekris2006-09-031-3/+1
* Schedule these broken ports for termination on 2006-12-01kris2006-09-032-0/+4
* Folding@Home is a distributed computing project -- people from through out thepav2006-08-295-0/+61
* - s,INSTALLS_SHLIB,USE_LDCONFIG,gclsung2006-08-141-1/+1
* Mark as broken for i386 4.xedwin2006-08-111-1/+7
* Unmark BROKEN, it seems to be caused by a stale distfile on ftp-master.erwin2006-08-041-2/+0
* Mark BROKEN: checksum mismatcherwin2006-08-041-0/+2
* Mark broken due to checksum mismatcherwin2006-08-041-0/+2
* - Update to 5.10pav2006-07-182-8/+8
* - Fix pkg-plist [1]rafan2006-07-102-12/+19
* - Update to 2.4.3rafan2006-07-088-234/+147
* - Use the correct MASTER_SITE_SUBDIR, make it fetchablerafan2006-07-041-1/+1
* Mark as BROKEN on sparc64 due to internal compiler error.linimon2006-07-041-1/+7
* Update to 1.10 (maintained by others) and unbreak.maho2006-07-0311-268/+50
* o Update to 0.99rc1maho2006-07-015-39/+203
* - Provide SSE optimized application as an optionpav2006-06-252-1/+12
* - Instruct amd64 users to libmap libpthread.so.2 to libc_r.so.6pav2006-06-232-3/+15
* SIMAP (Similarity Matrix of Proteins) is a public database of pre-calculatedpav2006-06-207-0/+110
* Re-add CONFIGURE_TARGET and fix libm detection.thierry2006-06-191-1/+5
* - Upgrade to to 1.9.9 and unbreak;thierry2006-06-184-146/+134
* USE_SIZE was obsoleted in rev. 1.484 of bsd.port.mk more thanerwin2006-06-111-1/+0
* - Update PORTREVISION to match latest release (see main web site)pav2006-06-113-8/+27
* - Update to 34.t25.d9pav2006-06-102-5/+5
* Update biology/ncbi-toolkit to the latest release.itetcu2006-06-063-5/+11
* - Add MASTER_SITEerwin2006-06-062-30/+31
* - Update to 34.t25.d8 [1]erwin2006-06-062-5/+5
* - update to 34.t25.d7sem2006-05-253-77/+7
* BROKEN: Unfetchablekris2006-05-221-0/+2
* - Update to 3.15sem2006-05-212-4/+4
* - Updated from 0.07 to 0.12aaron2006-05-203-12/+25
* Adding port biology/p5-Bio-Phylo, Phylogenetic analysis using perl.aaron2006-05-145-0/+110
* - Update to 34.t25.d6sem2006-05-084-38/+80
* Update to 21.u1.d1 (fixes fetch).lawrance2006-05-075-27/+18
* - Satisfy portlintsem2006-05-071-4/+3
* Add protomol 2.0.3, OO, component based, framework for molecularehaupt2006-05-065-0/+201
* Remove USE_REINPLACE from all categories starting with Bedwin2006-05-0421-22/+0
* - Update to 1.89leeym2006-05-036-16/+60
* Bioperl-run contain modules that provides a PERL interface to variousgarga2006-05-035-0/+784
* Bioperl-run contain modules that provides a PERL interface to variousgarga2006-05-035-0/+752
* - Update to 1.0.0pav2006-04-263-40/+174
* BROKEN: Does not compilekris2006-04-231-0/+2
* Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking aboutlinimon2006-04-055-5/+5
* Reset jeremy@external.org who has not responded to email asking aboutlinimon2006-04-051-1/+1
* - Update to 2006.02.13mnag2006-04-053-8/+8
* Use SUB_FILES for pkg-messageedwin2006-04-014-1/+4
* For EMBOSS:thierry2006-03-3122-1458/+7820
* - Update to 34.t25.d5pav2006-03-212-4/+4
* - Update to 5.743garga2006-03-194-44/+13
* Add lagan 1.2, efficient tools for large-scale multiple alignments ofgarga2006-03-176-0/+136
* Add mafft 5.734, multiple sequence alignments based on fast Fouriergarga2006-03-156-0/+119
* Add dotter 20021204 # last modified date in FTP server, a viewer forgarga2006-03-154-0/+63
* Add blat 33, a fast tool for local sequence similarity searches.garga2006-03-156-0/+100
* Add belvu 2.29, a viewer for multiple sequence alignments.garga2006-03-154-0/+54
* Update to 1.5maho2006-03-154-211/+229
* Bump PORTREVISION on glib12/gtk12 consumer ports to ease the upgrade path.ade2006-03-071-1/+1
* Conversion to a single libtool environment.ade2006-02-234-2/+8
* BROKEN: Configure failskris2006-02-201-0/+2
* Jalview is a multiple alignment editor written in Java. It is used widely in ahq2006-02-137-0/+137
* Reset maintainership to ports@ after ~4 months without any response to anynetchild2006-02-121-1/+1
* Update to 3.27.lawrance2006-02-103-10/+18
* Update to 34.t25.d4.lawrance2006-02-1011-167/+155
* Update to 2006.01.25.lawrance2006-02-092-10/+9
* Put PORTEPOCH back.lawrance2006-02-091-0/+1
* Update to 3.65.lawrance2006-02-083-73/+17
* Remove CONFLICTS with nss.marcus2006-02-031-1/+1
* Add missing USE_ICONVkris2006-01-261-0/+1
* SHA256ify (manually done and checked)edwin2006-01-222-1/+5
* SHA256ifyedwin2006-01-2230-0/+41
* Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtryedwin2006-01-224-12/+12
* Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtryedwin2006-01-221-1/+1
* Utilize EXAMPLESDIR.danfe2006-01-201-3/+3
* - Resurrect, update to version 1.5 (literally 1.50 since I wanted to avoiddanfe2006-01-205-0/+57
* - Remove expired portspav2006-01-1517-462/+0
* - Update to 2.0.20060101pav2006-01-152-2/+4
* - Update to 2005.12.06pav2006-01-154-44/+60
* - Chase openbabel updatepav2006-01-141-3/+2
* BROKEN: Broken dependencykris2006-01-141-0/+2
* - Update graphics/libglut to 6.4.1.sem2006-01-123-4/+7
* Fix maintainer addressedwin2006-01-096-6/+6
* Hash with SHA-256.trevor2006-01-081-0/+1
* - Remove symlinks that belong to mtreepav2006-01-061-2/+0
* possible fix to unbreak biology/L-Breederedwin2006-01-039-107/+60
* - New upstream version; two patches incorporated.tdb2005-12-105-39/+9
* Update to 1.3.1ehaupt2005-12-072-3/+3
* - Update to 2005.13.07 to make fetchable againtdb2005-12-063-6/+31
* - Update to 3.18 to make fetchable againtdb2005-12-062-6/+11
* Update to 0.5.1mnag2005-12-063-23/+6
* - Fix fetch problemstdb2005-12-062-3/+5
* Add conflicts:edwin2005-12-051-1/+1
* Add conflicst:edwin2005-12-051-0/+2
* Fix port: biology/p5-bioperl-develedwin2005-12-041-0/+2
* - Re-add p5-bioperl-devel, development version of biology/p5-bioperlbarner2005-12-036-0/+2586
* - Unbreak by updating to 4.4barner2005-12-014-25/+22
* Add the right MASTER_SITE_SUBDIR, so that this port is fetchable fromfenner2005-11-261-0/+1
* - Add SHA256pav2005-11-2416-0/+16
* - Drop old povchem.c checksumpav2005-11-241-1/+4
* - BROKEN: Size mismatchpav2005-11-241-0/+2
* BROKEN: Size mismatchkris2005-11-161-0/+2
* Mass-conversion to the USE_AUTOTOOLS New World Order. The code presentade2005-11-152-2/+2
* - Mark it as DEPRECATED - master site disapearedgarga2005-11-111-0/+3
* - Mark it as DEPRECATED - master site disapearedgarga2005-11-111-0/+3
* - Mark it as DEPRECATED (mastersite disapeared)garga2005-11-111-0/+3
* With portmgr hat on, reset maintainership of knu's ports since he haslinimon2005-11-111-1/+1
* Update to 1.41mnag2005-11-115-44/+87
* Update to 3.14bmnag2005-11-102-9/+11
* Remove expired portskris2005-11-057-110/+0
* Bump PORTREVISION to chase the glib20 shared library update.marcus2005-11-054-3/+4
* Mark DEPRECATED since upstream is unmaintained and mastersite is gone.lawrance2005-10-291-0/+3
* BROKEN: Unfetchablekris2005-10-281-0/+2
* Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser forehaupt2005-10-165-0/+61
* - Update to 20050605sem2005-10-125-20/+36
* - Update to 3.13. It fixes fetching.sem2005-10-124-167/+61
* Update to 0.9.8maho2005-10-103-318/+363
generated by cgit (git 2.34.1) at 2024-11-30 12:22:31 +0800